Gene : Medtr5g077070 M. truncatula Mt4.0v1
Defline:  (1 of 3) 1.1.1.42 - Isocitrate dehydrogenase (NADP(+)) / oxalosuccinate carboxylase Description:  NADP-dependent isocitrate dehydrogenase
Genomic Order:  4234 Name:  ? Medtr5g077070
Secondary Identifier:  ? PAC:31090818
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6549 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g077070 0.5kb upstream 0.5kb upstream 5567 true chr5: 32874791-32880357 Medicago truncatula
Medtr5g077070 0.5kb upstream 0.5kb upstream 500 false chr5: 32874791-32875290 Medicago truncatula
Medtr5g077070 0.5kb downstream 0.5kb downstream 5567 true chr5: 32875291-32880857 Medicago truncatula
Medtr5g077070 0.5kb downstream 0.5kb downstream 500 false chr5: 32880358-32880857 Medicago truncatula
Medtr5g077070 1.0kb upstream 1.0kb upstream 6067 true chr5: 32874291-32880357 Medicago truncatula
Medtr5g077070 1.0kb upstream 1.0kb upstream 1000 false chr5: 32874291-32875290 Medicago truncatula
Medtr5g077070 1.0kb downstream 1.0kb downstream 6067 true chr5: 32875291-32881357 Medicago truncatula
Medtr5g077070 1.0kb downstream 1.0kb downstream 1000 false chr5: 32880358-32881357 Medicago truncatula
Medtr5g077070 2.0kb upstream 2.0kb upstream 7067 true chr5: 32873291-32880357 Medicago truncatula
Medtr5g077070 2.0kb upstream 2.0kb upstream 2000 false chr5: 32873291-32875290 Medicago truncatula
Medtr5g077070 2.0kb downstream 2.0kb downstream 7067 true chr5: 32875291-32882357 Medicago truncatula
Medtr5g077070 2.0kb downstream 2.0kb downstream 2000 false chr5: 32880358-32882357 Medicago truncatula
Medtr5g077070 5.0kb upstream 5.0kb upstream 10067 true chr5: 32870291-32880357 Medicago truncatula
Medtr5g077070 5.0kb upstream 5.0kb upstream 5000 false chr5: 32870291-32875290 Medicago truncatula
Medtr5g077070 5.0kb downstream 5.0kb downstream 10067 true chr5: 32875291-32885357 Medicago truncatula
Medtr5g077070 5.0kb downstream 5.0kb downstream 5000 false chr5: 32880358-32885357 Medicago truncatula
Medtr5g077070 10.0kb upstream 10.0kb upstream 15067 true chr5: 32865291-32880357 Medicago truncatula
Medtr5g077070 10.0kb upstream 10.0kb upstream 10000 false chr5: 32865291-32875290 Medicago truncatula
Medtr5g077070 10.0kb downstream 10.0kb downstream 15067 true chr5: 32875291-32890357 Medicago truncatula
Medtr5g077070 10.0kb downstream 10.0kb downstream 10000 false chr5: 32880358-32890357 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307318 5265 Fabidae View MSA
124070230 5270 Rosid View MSA
123744673 5271 Pentapetalae View MSA
122792686 5272 Eudicot View MSA
122045414 5273 Angiosperm View MSA
121351363 5274 Embryophyte View MSA
123426624 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.903     High  
cufflinks 25.427     High Low
cufflinks 39.044     High  
cufflinks 71.946     High High
cufflinks 33.721     High  
cufflinks 34.773     High  
cufflinks 52.736     High  
cufflinks 30.635     High  
cufflinks 78.451     High High

0 Strain