Gene : Medtr5g076170 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR31852:SF1 - LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN-RELATED Description:  late embryogenesis abundant hydroxyproline-rich glycoprotein, putative
Genomic Order:  4167 Name:  ? Medtr5g076170
Secondary Identifier:  ? PAC:31085992
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g076170 0.5kb upstream 0.5kb upstream 1603 true chr5: 32436231-32437833 Medicago truncatula
Medtr5g076170 0.5kb upstream 0.5kb upstream 500 false chr5: 32436231-32436730 Medicago truncatula
Medtr5g076170 0.5kb downstream 0.5kb downstream 1603 true chr5: 32436731-32438333 Medicago truncatula
Medtr5g076170 0.5kb downstream 0.5kb downstream 500 false chr5: 32437834-32438333 Medicago truncatula
Medtr5g076170 1.0kb upstream 1.0kb upstream 2103 true chr5: 32435731-32437833 Medicago truncatula
Medtr5g076170 1.0kb upstream 1.0kb upstream 1000 false chr5: 32435731-32436730 Medicago truncatula
Medtr5g076170 1.0kb downstream 1.0kb downstream 2103 true chr5: 32436731-32438833 Medicago truncatula
Medtr5g076170 1.0kb downstream 1.0kb downstream 1000 false chr5: 32437834-32438833 Medicago truncatula
Medtr5g076170 2.0kb upstream 2.0kb upstream 3103 true chr5: 32434731-32437833 Medicago truncatula
Medtr5g076170 2.0kb upstream 2.0kb upstream 2000 false chr5: 32434731-32436730 Medicago truncatula
Medtr5g076170 2.0kb downstream 2.0kb downstream 3103 true chr5: 32436731-32439833 Medicago truncatula
Medtr5g076170 2.0kb downstream 2.0kb downstream 2000 false chr5: 32437834-32439833 Medicago truncatula
Medtr5g076170 5.0kb upstream 5.0kb upstream 6103 true chr5: 32431731-32437833 Medicago truncatula
Medtr5g076170 5.0kb upstream 5.0kb upstream 5000 false chr5: 32431731-32436730 Medicago truncatula
Medtr5g076170 5.0kb downstream 5.0kb downstream 6103 true chr5: 32436731-32442833 Medicago truncatula
Medtr5g076170 5.0kb downstream 5.0kb downstream 5000 false chr5: 32437834-32442833 Medicago truncatula
Medtr5g076170 10.0kb upstream 10.0kb upstream 11103 true chr5: 32426731-32437833 Medicago truncatula
Medtr5g076170 10.0kb upstream 10.0kb upstream 10000 false chr5: 32426731-32436730 Medicago truncatula
Medtr5g076170 10.0kb downstream 10.0kb downstream 11103 true chr5: 32436731-32447833 Medicago truncatula
Medtr5g076170 10.0kb downstream 10.0kb downstream 10000 false chr5: 32437834-32447833 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313282 5265 Fabidae View MSA
124063776 5270 Rosid View MSA
123751487 5271 Pentapetalae View MSA
122787858 5272 Eudicot View MSA
122044505 5273 Angiosperm View MSA
121351108 5274 Embryophyte View MSA
123382008 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.322     High  
cufflinks 0.874        
cufflinks 0.682       Low
cufflinks 30.546     High  
cufflinks 0.657       Low
cufflinks 49.863     High  
cufflinks 113.337     High High
cufflinks 0.628       Low
cufflinks 25.117     High  

0 Strain