Gene : Medtr5g080020 M. truncatula Mt4.0v1
Defline:  (1 of 1) 2.1.1.166 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase / Um2552 methyltransferase Description:  ribosomal RNA large subunit methyltransferase
Genomic Order:  4416 Name:  ? Medtr5g080020
Secondary Identifier:  ? PAC:31087642
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g080020 0.5kb upstream 0.5kb upstream 3394 true chr5: 34248944-34252337 Medicago truncatula
Medtr5g080020 0.5kb upstream 0.5kb upstream 500 false chr5: 34248944-34249443 Medicago truncatula
Medtr5g080020 0.5kb downstream 0.5kb downstream 3394 true chr5: 34249444-34252837 Medicago truncatula
Medtr5g080020 0.5kb downstream 0.5kb downstream 500 false chr5: 34252338-34252837 Medicago truncatula
Medtr5g080020 1.0kb upstream 1.0kb upstream 3894 true chr5: 34248444-34252337 Medicago truncatula
Medtr5g080020 1.0kb upstream 1.0kb upstream 1000 false chr5: 34248444-34249443 Medicago truncatula
Medtr5g080020 1.0kb downstream 1.0kb downstream 3894 true chr5: 34249444-34253337 Medicago truncatula
Medtr5g080020 1.0kb downstream 1.0kb downstream 1000 false chr5: 34252338-34253337 Medicago truncatula
Medtr5g080020 2.0kb upstream 2.0kb upstream 4894 true chr5: 34247444-34252337 Medicago truncatula
Medtr5g080020 2.0kb upstream 2.0kb upstream 2000 false chr5: 34247444-34249443 Medicago truncatula
Medtr5g080020 2.0kb downstream 2.0kb downstream 4894 true chr5: 34249444-34254337 Medicago truncatula
Medtr5g080020 2.0kb downstream 2.0kb downstream 2000 false chr5: 34252338-34254337 Medicago truncatula
Medtr5g080020 5.0kb upstream 5.0kb upstream 7894 true chr5: 34244444-34252337 Medicago truncatula
Medtr5g080020 5.0kb upstream 5.0kb upstream 5000 false chr5: 34244444-34249443 Medicago truncatula
Medtr5g080020 5.0kb downstream 5.0kb downstream 7894 true chr5: 34249444-34257337 Medicago truncatula
Medtr5g080020 5.0kb downstream 5.0kb downstream 5000 false chr5: 34252338-34257337 Medicago truncatula
Medtr5g080020 10.0kb upstream 10.0kb upstream 12894 true chr5: 34239444-34252337 Medicago truncatula
Medtr5g080020 10.0kb upstream 10.0kb upstream 10000 false chr5: 34239444-34249443 Medicago truncatula
Medtr5g080020 10.0kb downstream 10.0kb downstream 12894 true chr5: 34249444-34262337 Medicago truncatula
Medtr5g080020 10.0kb downstream 10.0kb downstream 10000 false chr5: 34252338-34262337 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303708 5265 Fabidae View MSA
124063503 5270 Rosid View MSA
123742065 5271 Pentapetalae View MSA
122791552 5272 Eudicot View MSA
122044785 5273 Angiosperm View MSA
121347520 5274 Embryophyte View MSA
123424894 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.66        
cufflinks 0.884        
cufflinks 1.052        
cufflinks 1.011        
cufflinks 1.252       High
cufflinks 0.363       Low
cufflinks 0.813        
cufflinks 1.086        
cufflinks 0.901        

0 Strain