Gene : Medtr5g076920 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR13040 - AUTOPHAGY PROTEIN 5 Description:  autophagy protein Apg5
Genomic Order:  4222 Name:  ? Medtr5g076920
Secondary Identifier:  ? PAC:31089856
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g076920 0.5kb upstream 0.5kb upstream 6995 true chr5: 32806624-32813618 Medicago truncatula
Medtr5g076920 0.5kb upstream 0.5kb upstream 500 false chr5: 32813119-32813618 Medicago truncatula
Medtr5g076920 0.5kb downstream 0.5kb downstream 6995 true chr5: 32806124-32813118 Medicago truncatula
Medtr5g076920 0.5kb downstream 0.5kb downstream 500 false chr5: 32806124-32806623 Medicago truncatula
Medtr5g076920 1.0kb upstream 1.0kb upstream 7495 true chr5: 32806624-32814118 Medicago truncatula
Medtr5g076920 1.0kb upstream 1.0kb upstream 1000 false chr5: 32813119-32814118 Medicago truncatula
Medtr5g076920 1.0kb downstream 1.0kb downstream 7495 true chr5: 32805624-32813118 Medicago truncatula
Medtr5g076920 1.0kb downstream 1.0kb downstream 1000 false chr5: 32805624-32806623 Medicago truncatula
Medtr5g076920 2.0kb upstream 2.0kb upstream 8495 true chr5: 32806624-32815118 Medicago truncatula
Medtr5g076920 2.0kb upstream 2.0kb upstream 2000 false chr5: 32813119-32815118 Medicago truncatula
Medtr5g076920 2.0kb downstream 2.0kb downstream 8495 true chr5: 32804624-32813118 Medicago truncatula
Medtr5g076920 2.0kb downstream 2.0kb downstream 2000 false chr5: 32804624-32806623 Medicago truncatula
Medtr5g076920 5.0kb upstream 5.0kb upstream 11495 true chr5: 32806624-32818118 Medicago truncatula
Medtr5g076920 5.0kb upstream 5.0kb upstream 5000 false chr5: 32813119-32818118 Medicago truncatula
Medtr5g076920 5.0kb downstream 5.0kb downstream 11495 true chr5: 32801624-32813118 Medicago truncatula
Medtr5g076920 5.0kb downstream 5.0kb downstream 5000 false chr5: 32801624-32806623 Medicago truncatula
Medtr5g076920 10.0kb upstream 10.0kb upstream 16495 true chr5: 32806624-32823118 Medicago truncatula
Medtr5g076920 10.0kb upstream 10.0kb upstream 10000 false chr5: 32813119-32823118 Medicago truncatula
Medtr5g076920 10.0kb downstream 10.0kb downstream 16495 true chr5: 32796624-32813118 Medicago truncatula
Medtr5g076920 10.0kb downstream 10.0kb downstream 10000 false chr5: 32796624-32806623 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300915 5265 Fabidae View MSA
124066677 5270 Rosid View MSA
123746319 5271 Pentapetalae View MSA
122787337 5272 Eudicot View MSA
122043492 5273 Angiosperm View MSA
121349357 5274 Embryophyte View MSA
123424338 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.431        
cufflinks 0.48        
cufflinks 0.614       High
cufflinks 0.254       Low
cufflinks 0.571        
cufflinks 0.195       Low
cufflinks 0.433        
cufflinks 0.439        
cufflinks 0.369        

0 Strain