Gene : Medtr5g076620 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR31480:SF2 - PHYTOENE SYNTHASE, CHLOROPLASTIC Description:  squalene/phytoene synthase
Genomic Order:  4202 Name:  ? Medtr5g076620
Secondary Identifier:  ? PAC:31085903
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula CAROTENOID-PWY Medicago truncatula pathologic  
Mtruncatula PWY-6475 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g076620 0.5kb upstream 0.5kb upstream 5052 true chr5: 32685852-32690903 Medicago truncatula
Medtr5g076620 0.5kb upstream 0.5kb upstream 500 false chr5: 32690404-32690903 Medicago truncatula
Medtr5g076620 0.5kb downstream 0.5kb downstream 5052 true chr5: 32685352-32690403 Medicago truncatula
Medtr5g076620 0.5kb downstream 0.5kb downstream 500 false chr5: 32685352-32685851 Medicago truncatula
Medtr5g076620 1.0kb upstream 1.0kb upstream 5552 true chr5: 32685852-32691403 Medicago truncatula
Medtr5g076620 1.0kb upstream 1.0kb upstream 1000 false chr5: 32690404-32691403 Medicago truncatula
Medtr5g076620 1.0kb downstream 1.0kb downstream 5552 true chr5: 32684852-32690403 Medicago truncatula
Medtr5g076620 1.0kb downstream 1.0kb downstream 1000 false chr5: 32684852-32685851 Medicago truncatula
Medtr5g076620 2.0kb upstream 2.0kb upstream 6552 true chr5: 32685852-32692403 Medicago truncatula
Medtr5g076620 2.0kb upstream 2.0kb upstream 2000 false chr5: 32690404-32692403 Medicago truncatula
Medtr5g076620 2.0kb downstream 2.0kb downstream 6552 true chr5: 32683852-32690403 Medicago truncatula
Medtr5g076620 2.0kb downstream 2.0kb downstream 2000 false chr5: 32683852-32685851 Medicago truncatula
Medtr5g076620 5.0kb upstream 5.0kb upstream 9552 true chr5: 32685852-32695403 Medicago truncatula
Medtr5g076620 5.0kb upstream 5.0kb upstream 5000 false chr5: 32690404-32695403 Medicago truncatula
Medtr5g076620 5.0kb downstream 5.0kb downstream 9552 true chr5: 32680852-32690403 Medicago truncatula
Medtr5g076620 5.0kb downstream 5.0kb downstream 5000 false chr5: 32680852-32685851 Medicago truncatula
Medtr5g076620 10.0kb upstream 10.0kb upstream 14552 true chr5: 32685852-32700403 Medicago truncatula
Medtr5g076620 10.0kb upstream 10.0kb upstream 10000 false chr5: 32690404-32700403 Medicago truncatula
Medtr5g076620 10.0kb downstream 10.0kb downstream 14552 true chr5: 32675852-32690403 Medicago truncatula
Medtr5g076620 10.0kb downstream 10.0kb downstream 10000 false chr5: 32675852-32685851 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
122301582 5265 Fabidae View MSA
124069921 5270 Rosid View MSA
123743557 5271 Pentapetalae View MSA
122795955 5272 Eudicot View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.071       Low
cufflinks 4.161       High
cufflinks 2.079        
cufflinks 0.108        
cufflinks 5.455       High
cufflinks 0.094     Low  
cufflinks 0.128        
cufflinks 3.074        
cufflinks 0.209        

0 Strain