Gene : Medtr5g081240 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG4378 - Nuclear protein COP1 Description:  transducin/WD-like repeat-protein
Genomic Order:  4494 Name:  ? Medtr5g081240
Secondary Identifier:  ? PAC:31087048
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g081240 0.5kb upstream 0.5kb upstream 9010 true chr5: 34795201-34804210 Medicago truncatula
Medtr5g081240 0.5kb upstream 0.5kb upstream 500 false chr5: 34795201-34795700 Medicago truncatula
Medtr5g081240 0.5kb downstream 0.5kb downstream 9010 true chr5: 34795701-34804710 Medicago truncatula
Medtr5g081240 0.5kb downstream 0.5kb downstream 500 false chr5: 34804211-34804710 Medicago truncatula
Medtr5g081240 1.0kb upstream 1.0kb upstream 9510 true chr5: 34794701-34804210 Medicago truncatula
Medtr5g081240 1.0kb upstream 1.0kb upstream 1000 false chr5: 34794701-34795700 Medicago truncatula
Medtr5g081240 1.0kb downstream 1.0kb downstream 9510 true chr5: 34795701-34805210 Medicago truncatula
Medtr5g081240 1.0kb downstream 1.0kb downstream 1000 false chr5: 34804211-34805210 Medicago truncatula
Medtr5g081240 2.0kb upstream 2.0kb upstream 10510 true chr5: 34793701-34804210 Medicago truncatula
Medtr5g081240 2.0kb upstream 2.0kb upstream 2000 false chr5: 34793701-34795700 Medicago truncatula
Medtr5g081240 2.0kb downstream 2.0kb downstream 10510 true chr5: 34795701-34806210 Medicago truncatula
Medtr5g081240 2.0kb downstream 2.0kb downstream 2000 false chr5: 34804211-34806210 Medicago truncatula
Medtr5g081240 5.0kb upstream 5.0kb upstream 13510 true chr5: 34790701-34804210 Medicago truncatula
Medtr5g081240 5.0kb upstream 5.0kb upstream 5000 false chr5: 34790701-34795700 Medicago truncatula
Medtr5g081240 5.0kb downstream 5.0kb downstream 13510 true chr5: 34795701-34809210 Medicago truncatula
Medtr5g081240 5.0kb downstream 5.0kb downstream 5000 false chr5: 34804211-34809210 Medicago truncatula
Medtr5g081240 10.0kb upstream 10.0kb upstream 18510 true chr5: 34785701-34804210 Medicago truncatula
Medtr5g081240 10.0kb upstream 10.0kb upstream 10000 false chr5: 34785701-34795700 Medicago truncatula
Medtr5g081240 10.0kb downstream 10.0kb downstream 18510 true chr5: 34795701-34814210 Medicago truncatula
Medtr5g081240 10.0kb downstream 10.0kb downstream 10000 false chr5: 34804211-34814210 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041012 5273 Angiosperm View MSA
122302968 5265 Fabidae View MSA
124066799 5270 Rosid View MSA
123740021 5271 Pentapetalae View MSA
122787033 5272 Eudicot View MSA
121345186 5274 Embryophyte View MSA
123426376 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.069        
cufflinks 0.807        
cufflinks 0.803        
cufflinks 0.547        
cufflinks 0.982        
cufflinks 0.21       Low
cufflinks 0.763        
cufflinks 0.59        
cufflinks 0.986        

0 Strain