Gene : Medtr5g082260 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR31412:SF5 - ZINC METALLOPROTEASE EGY2, CHLOROPLASTIC-RELATED Description:  M50 family peptidase
Genomic Order:  4565 Name:  ? Medtr5g082260
Secondary Identifier:  ? PAC:31088903
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g082260 0.5kb upstream 0.5kb upstream 8881 true chr5: 35349340-35358220 Medicago truncatula
Medtr5g082260 0.5kb upstream 0.5kb upstream 500 false chr5: 35349340-35349839 Medicago truncatula
Medtr5g082260 0.5kb downstream 0.5kb downstream 8881 true chr5: 35349840-35358720 Medicago truncatula
Medtr5g082260 0.5kb downstream 0.5kb downstream 500 false chr5: 35358221-35358720 Medicago truncatula
Medtr5g082260 1.0kb upstream 1.0kb upstream 9381 true chr5: 35348840-35358220 Medicago truncatula
Medtr5g082260 1.0kb upstream 1.0kb upstream 1000 false chr5: 35348840-35349839 Medicago truncatula
Medtr5g082260 1.0kb downstream 1.0kb downstream 9381 true chr5: 35349840-35359220 Medicago truncatula
Medtr5g082260 1.0kb downstream 1.0kb downstream 1000 false chr5: 35358221-35359220 Medicago truncatula
Medtr5g082260 2.0kb upstream 2.0kb upstream 10381 true chr5: 35347840-35358220 Medicago truncatula
Medtr5g082260 2.0kb upstream 2.0kb upstream 2000 false chr5: 35347840-35349839 Medicago truncatula
Medtr5g082260 2.0kb downstream 2.0kb downstream 10381 true chr5: 35349840-35360220 Medicago truncatula
Medtr5g082260 2.0kb downstream 2.0kb downstream 2000 false chr5: 35358221-35360220 Medicago truncatula
Medtr5g082260 5.0kb upstream 5.0kb upstream 13381 true chr5: 35344840-35358220 Medicago truncatula
Medtr5g082260 5.0kb upstream 5.0kb upstream 5000 false chr5: 35344840-35349839 Medicago truncatula
Medtr5g082260 5.0kb downstream 5.0kb downstream 13381 true chr5: 35349840-35363220 Medicago truncatula
Medtr5g082260 5.0kb downstream 5.0kb downstream 5000 false chr5: 35358221-35363220 Medicago truncatula
Medtr5g082260 10.0kb upstream 10.0kb upstream 18381 true chr5: 35339840-35358220 Medicago truncatula
Medtr5g082260 10.0kb upstream 10.0kb upstream 10000 false chr5: 35339840-35349839 Medicago truncatula
Medtr5g082260 10.0kb downstream 10.0kb downstream 18381 true chr5: 35349840-35368220 Medicago truncatula
Medtr5g082260 10.0kb downstream 10.0kb downstream 10000 false chr5: 35358221-35368220 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301078 5265 Fabidae View MSA
124061333 5270 Rosid View MSA
123739814 5271 Pentapetalae View MSA
122788407 5272 Eudicot View MSA
122044367 5273 Angiosperm View MSA
121345535 5274 Embryophyte View MSA
123425233 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.007     Low Low
cufflinks 7.044        
cufflinks 6.902        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 13.078     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low Low
cufflinks 7.32        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain