Gene : Medtr5g071340 M. truncatula Mt4.0v1
Defline:  (1 of 2) PF00628//PF05641//PF16135 - PHD-finger (PHD) // Agenet domain (Agenet) // TPL-binding domain in jasmonate signalling (Jas) Description:  PHD zinc finger protein
Genomic Order:  3871 Name:  ? Medtr5g071340
Secondary Identifier:  ? PAC:31090392
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g071340 0.5kb upstream 0.5kb upstream 6516 true chr5: 30255474-30261989 Medicago truncatula
Medtr5g071340 0.5kb upstream 0.5kb upstream 500 false chr5: 30255474-30255973 Medicago truncatula
Medtr5g071340 0.5kb downstream 0.5kb downstream 6516 true chr5: 30255974-30262489 Medicago truncatula
Medtr5g071340 0.5kb downstream 0.5kb downstream 500 false chr5: 30261990-30262489 Medicago truncatula
Medtr5g071340 1.0kb upstream 1.0kb upstream 7016 true chr5: 30254974-30261989 Medicago truncatula
Medtr5g071340 1.0kb upstream 1.0kb upstream 1000 false chr5: 30254974-30255973 Medicago truncatula
Medtr5g071340 1.0kb downstream 1.0kb downstream 7016 true chr5: 30255974-30262989 Medicago truncatula
Medtr5g071340 1.0kb downstream 1.0kb downstream 1000 false chr5: 30261990-30262989 Medicago truncatula
Medtr5g071340 2.0kb upstream 2.0kb upstream 8016 true chr5: 30253974-30261989 Medicago truncatula
Medtr5g071340 2.0kb upstream 2.0kb upstream 2000 false chr5: 30253974-30255973 Medicago truncatula
Medtr5g071340 2.0kb downstream 2.0kb downstream 8016 true chr5: 30255974-30263989 Medicago truncatula
Medtr5g071340 2.0kb downstream 2.0kb downstream 2000 false chr5: 30261990-30263989 Medicago truncatula
Medtr5g071340 5.0kb upstream 5.0kb upstream 11016 true chr5: 30250974-30261989 Medicago truncatula
Medtr5g071340 5.0kb upstream 5.0kb upstream 5000 false chr5: 30250974-30255973 Medicago truncatula
Medtr5g071340 5.0kb downstream 5.0kb downstream 11016 true chr5: 30255974-30266989 Medicago truncatula
Medtr5g071340 5.0kb downstream 5.0kb downstream 5000 false chr5: 30261990-30266989 Medicago truncatula
Medtr5g071340 10.0kb upstream 10.0kb upstream 16016 true chr5: 30245974-30261989 Medicago truncatula
Medtr5g071340 10.0kb upstream 10.0kb upstream 10000 false chr5: 30245974-30255973 Medicago truncatula
Medtr5g071340 10.0kb downstream 10.0kb downstream 16016 true chr5: 30255974-30271989 Medicago truncatula
Medtr5g071340 10.0kb downstream 10.0kb downstream 10000 false chr5: 30261990-30271989 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312419 5265 Fabidae View MSA
124072957 5270 Rosid View MSA
123753640 5271 Pentapetalae View MSA
122796648 5272 Eudicot View MSA
122050898 5273 Angiosperm View MSA
121351041 5274 Embryophyte View MSA
123425735 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.041     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain