Gene : Medtr6g017165 M. truncatula Mt4.0v1
Defline:  (1 of 5) PTHR31843:SF2 - ALLENE OXIDE CYCLASE 1, CHLOROPLASTIC-RELATED Description:  allene oxide cyclase
Genomic Order:  896 Name:  ? Medtr6g017165
Secondary Identifier:  ? PAC:31103897
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-735 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g017165 0.5kb upstream 0.5kb upstream 3178 true chr6: 6797230-6800407 Medicago truncatula
Medtr6g017165 0.5kb upstream 0.5kb upstream 500 false chr6: 6797230-6797729 Medicago truncatula
Medtr6g017165 0.5kb downstream 0.5kb downstream 3178 true chr6: 6797730-6800907 Medicago truncatula
Medtr6g017165 0.5kb downstream 0.5kb downstream 500 false chr6: 6800408-6800907 Medicago truncatula
Medtr6g017165 1.0kb upstream 1.0kb upstream 3678 true chr6: 6796730-6800407 Medicago truncatula
Medtr6g017165 1.0kb upstream 1.0kb upstream 1000 false chr6: 6796730-6797729 Medicago truncatula
Medtr6g017165 1.0kb downstream 1.0kb downstream 3678 true chr6: 6797730-6801407 Medicago truncatula
Medtr6g017165 1.0kb downstream 1.0kb downstream 1000 false chr6: 6800408-6801407 Medicago truncatula
Medtr6g017165 2.0kb upstream 2.0kb upstream 4678 true chr6: 6795730-6800407 Medicago truncatula
Medtr6g017165 2.0kb upstream 2.0kb upstream 2000 false chr6: 6795730-6797729 Medicago truncatula
Medtr6g017165 2.0kb downstream 2.0kb downstream 4678 true chr6: 6797730-6802407 Medicago truncatula
Medtr6g017165 2.0kb downstream 2.0kb downstream 2000 false chr6: 6800408-6802407 Medicago truncatula
Medtr6g017165 5.0kb upstream 5.0kb upstream 7678 true chr6: 6792730-6800407 Medicago truncatula
Medtr6g017165 5.0kb upstream 5.0kb upstream 5000 false chr6: 6792730-6797729 Medicago truncatula
Medtr6g017165 5.0kb downstream 5.0kb downstream 7678 true chr6: 6797730-6805407 Medicago truncatula
Medtr6g017165 5.0kb downstream 5.0kb downstream 5000 false chr6: 6800408-6805407 Medicago truncatula
Medtr6g017165 10.0kb upstream 10.0kb upstream 12678 true chr6: 6787730-6800407 Medicago truncatula
Medtr6g017165 10.0kb upstream 10.0kb upstream 10000 false chr6: 6787730-6797729 Medicago truncatula
Medtr6g017165 10.0kb downstream 10.0kb downstream 12678 true chr6: 6797730-6810407 Medicago truncatula
Medtr6g017165 10.0kb downstream 10.0kb downstream 10000 false chr6: 6800408-6810407 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298183 5265 Fabidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.027     Low  

0 Strain