Gene : Medtr6g017155 M. truncatula Mt4.0v1
Defline:  (1 of 5) PTHR31843:SF2 - ALLENE OXIDE CYCLASE 1, CHLOROPLASTIC-RELATED Description:  allene oxide cyclase
Genomic Order:  895 Name:  ? Medtr6g017155
Secondary Identifier:  ? PAC:31101745
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-735 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g017155 0.5kb upstream 0.5kb upstream 2804 true chr6: 6790075-6792878 Medicago truncatula
Medtr6g017155 0.5kb upstream 0.5kb upstream 500 false chr6: 6790075-6790574 Medicago truncatula
Medtr6g017155 0.5kb downstream 0.5kb downstream 2804 true chr6: 6790575-6793378 Medicago truncatula
Medtr6g017155 0.5kb downstream 0.5kb downstream 500 false chr6: 6792879-6793378 Medicago truncatula
Medtr6g017155 1.0kb upstream 1.0kb upstream 3304 true chr6: 6789575-6792878 Medicago truncatula
Medtr6g017155 1.0kb upstream 1.0kb upstream 1000 false chr6: 6789575-6790574 Medicago truncatula
Medtr6g017155 1.0kb downstream 1.0kb downstream 3304 true chr6: 6790575-6793878 Medicago truncatula
Medtr6g017155 1.0kb downstream 1.0kb downstream 1000 false chr6: 6792879-6793878 Medicago truncatula
Medtr6g017155 2.0kb upstream 2.0kb upstream 4304 true chr6: 6788575-6792878 Medicago truncatula
Medtr6g017155 2.0kb upstream 2.0kb upstream 2000 false chr6: 6788575-6790574 Medicago truncatula
Medtr6g017155 2.0kb downstream 2.0kb downstream 4304 true chr6: 6790575-6794878 Medicago truncatula
Medtr6g017155 2.0kb downstream 2.0kb downstream 2000 false chr6: 6792879-6794878 Medicago truncatula
Medtr6g017155 5.0kb upstream 5.0kb upstream 7304 true chr6: 6785575-6792878 Medicago truncatula
Medtr6g017155 5.0kb upstream 5.0kb upstream 5000 false chr6: 6785575-6790574 Medicago truncatula
Medtr6g017155 5.0kb downstream 5.0kb downstream 7304 true chr6: 6790575-6797878 Medicago truncatula
Medtr6g017155 5.0kb downstream 5.0kb downstream 5000 false chr6: 6792879-6797878 Medicago truncatula
Medtr6g017155 10.0kb upstream 10.0kb upstream 12304 true chr6: 6780575-6792878 Medicago truncatula
Medtr6g017155 10.0kb upstream 10.0kb upstream 10000 false chr6: 6780575-6790574 Medicago truncatula
Medtr6g017155 10.0kb downstream 10.0kb downstream 12304 true chr6: 6790575-6802878 Medicago truncatula
Medtr6g017155 10.0kb downstream 10.0kb downstream 10000 false chr6: 6792879-6802878 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298183 5265 Fabidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.04     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain