Gene : Medtr6g016990 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR13316 - ZINC FINGER, CCHC DOMAIN CONTAINING 8 Description:  proline-rich spliceosome-associated family protein, putative
Genomic Order:  874 Name:  ? Medtr6g016990
Secondary Identifier:  ? PAC:31103913
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g016990 0.5kb upstream 0.5kb upstream 9217 true chr6: 6652394-6661610 Medicago truncatula
Medtr6g016990 0.5kb upstream 0.5kb upstream 500 false chr6: 6652394-6652893 Medicago truncatula
Medtr6g016990 0.5kb downstream 0.5kb downstream 9217 true chr6: 6652894-6662110 Medicago truncatula
Medtr6g016990 0.5kb downstream 0.5kb downstream 500 false chr6: 6661611-6662110 Medicago truncatula
Medtr6g016990 1.0kb upstream 1.0kb upstream 9717 true chr6: 6651894-6661610 Medicago truncatula
Medtr6g016990 1.0kb upstream 1.0kb upstream 1000 false chr6: 6651894-6652893 Medicago truncatula
Medtr6g016990 1.0kb downstream 1.0kb downstream 9717 true chr6: 6652894-6662610 Medicago truncatula
Medtr6g016990 1.0kb downstream 1.0kb downstream 1000 false chr6: 6661611-6662610 Medicago truncatula
Medtr6g016990 2.0kb upstream 2.0kb upstream 10717 true chr6: 6650894-6661610 Medicago truncatula
Medtr6g016990 2.0kb upstream 2.0kb upstream 2000 false chr6: 6650894-6652893 Medicago truncatula
Medtr6g016990 2.0kb downstream 2.0kb downstream 10717 true chr6: 6652894-6663610 Medicago truncatula
Medtr6g016990 2.0kb downstream 2.0kb downstream 2000 false chr6: 6661611-6663610 Medicago truncatula
Medtr6g016990 5.0kb upstream 5.0kb upstream 13717 true chr6: 6647894-6661610 Medicago truncatula
Medtr6g016990 5.0kb upstream 5.0kb upstream 5000 false chr6: 6647894-6652893 Medicago truncatula
Medtr6g016990 5.0kb downstream 5.0kb downstream 13717 true chr6: 6652894-6666610 Medicago truncatula
Medtr6g016990 5.0kb downstream 5.0kb downstream 5000 false chr6: 6661611-6666610 Medicago truncatula
Medtr6g016990 10.0kb upstream 10.0kb upstream 18717 true chr6: 6642894-6661610 Medicago truncatula
Medtr6g016990 10.0kb upstream 10.0kb upstream 10000 false chr6: 6642894-6652893 Medicago truncatula
Medtr6g016990 10.0kb downstream 10.0kb downstream 18717 true chr6: 6652894-6671610 Medicago truncatula
Medtr6g016990 10.0kb downstream 10.0kb downstream 10000 false chr6: 6661611-6671610 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306367 5265 Fabidae View MSA
124060877 5270 Rosid View MSA
123753433 5271 Pentapetalae View MSA
122793769 5272 Eudicot View MSA
122044061 5273 Angiosperm View MSA
121350555 5274 Embryophyte View MSA
123424500 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.994        
cufflinks 4.567        
cufflinks 8.729       High
cufflinks 3.033        
cufflinks 5.893        
cufflinks 1.21       Low
cufflinks 4.36        
cufflinks 6.56        
cufflinks 3.942        

0 Strain