Gene : Medtr6g018550 M. truncatula Mt4.0v1
Defline:  (1 of 5) 5.3.99.9 - Neoxanthin synthase / NSY Description:  neoxanthin synthase
Genomic Order:  936 Name:  ? Medtr6g018550
Secondary Identifier:  ? PAC:31102463
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6809 Medicago truncatula pathologic  
Mtruncatula PWY-695 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g018550 0.5kb upstream 0.5kb upstream 3741 true chr6: 7109673-7113413 Medicago truncatula
Medtr6g018550 0.5kb upstream 0.5kb upstream 500 false chr6: 7109673-7110172 Medicago truncatula
Medtr6g018550 0.5kb downstream 0.5kb downstream 3741 true chr6: 7110173-7113913 Medicago truncatula
Medtr6g018550 0.5kb downstream 0.5kb downstream 500 false chr6: 7113414-7113913 Medicago truncatula
Medtr6g018550 1.0kb upstream 1.0kb upstream 4241 true chr6: 7109173-7113413 Medicago truncatula
Medtr6g018550 1.0kb upstream 1.0kb upstream 1000 false chr6: 7109173-7110172 Medicago truncatula
Medtr6g018550 1.0kb downstream 1.0kb downstream 4241 true chr6: 7110173-7114413 Medicago truncatula
Medtr6g018550 1.0kb downstream 1.0kb downstream 1000 false chr6: 7113414-7114413 Medicago truncatula
Medtr6g018550 2.0kb upstream 2.0kb upstream 5241 true chr6: 7108173-7113413 Medicago truncatula
Medtr6g018550 2.0kb upstream 2.0kb upstream 2000 false chr6: 7108173-7110172 Medicago truncatula
Medtr6g018550 2.0kb downstream 2.0kb downstream 5241 true chr6: 7110173-7115413 Medicago truncatula
Medtr6g018550 2.0kb downstream 2.0kb downstream 2000 false chr6: 7113414-7115413 Medicago truncatula
Medtr6g018550 5.0kb upstream 5.0kb upstream 8241 true chr6: 7105173-7113413 Medicago truncatula
Medtr6g018550 5.0kb upstream 5.0kb upstream 5000 false chr6: 7105173-7110172 Medicago truncatula
Medtr6g018550 5.0kb downstream 5.0kb downstream 8241 true chr6: 7110173-7118413 Medicago truncatula
Medtr6g018550 5.0kb downstream 5.0kb downstream 5000 false chr6: 7113414-7118413 Medicago truncatula
Medtr6g018550 10.0kb upstream 10.0kb upstream 13241 true chr6: 7100173-7113413 Medicago truncatula
Medtr6g018550 10.0kb upstream 10.0kb upstream 10000 false chr6: 7100173-7110172 Medicago truncatula
Medtr6g018550 10.0kb downstream 10.0kb downstream 13241 true chr6: 7110173-7123413 Medicago truncatula
Medtr6g018550 10.0kb downstream 10.0kb downstream 10000 false chr6: 7113414-7123413 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312106 5265 Fabidae View MSA
124062178 5270 Rosid View MSA
123748588 5271 Pentapetalae View MSA
122790006 5272 Eudicot View MSA
122047205 5273 Angiosperm View MSA
121346000 5274 Embryophyte View MSA
123425892 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.112        
cufflinks 0.211        
cufflinks 0.022     Low Low
cufflinks 0.197        
cufflinks 0.358       High
cufflinks 0.095        
cufflinks 0.167        
cufflinks 0.286        

0 Strain