Gene : Medtr6g025680 M. truncatula Mt4.0v1
Defline:  (1 of 5) 5.3.99.9 - Neoxanthin synthase / NSY Description:  neoxanthin synthase
Genomic Order:  1163 Name:  ? Medtr6g025680
Secondary Identifier:  ? PAC:31102269
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6809 Medicago truncatula pathologic  
Mtruncatula PWY-695 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g025680 0.5kb upstream 0.5kb upstream 3866 true chr6: 8780952-8784817 Medicago truncatula
Medtr6g025680 0.5kb upstream 0.5kb upstream 500 false chr6: 8784318-8784817 Medicago truncatula
Medtr6g025680 0.5kb downstream 0.5kb downstream 3866 true chr6: 8780452-8784317 Medicago truncatula
Medtr6g025680 0.5kb downstream 0.5kb downstream 500 false chr6: 8780452-8780951 Medicago truncatula
Medtr6g025680 1.0kb upstream 1.0kb upstream 4366 true chr6: 8780952-8785317 Medicago truncatula
Medtr6g025680 1.0kb upstream 1.0kb upstream 1000 false chr6: 8784318-8785317 Medicago truncatula
Medtr6g025680 1.0kb downstream 1.0kb downstream 4366 true chr6: 8779952-8784317 Medicago truncatula
Medtr6g025680 1.0kb downstream 1.0kb downstream 1000 false chr6: 8779952-8780951 Medicago truncatula
Medtr6g025680 2.0kb upstream 2.0kb upstream 5366 true chr6: 8780952-8786317 Medicago truncatula
Medtr6g025680 2.0kb upstream 2.0kb upstream 2000 false chr6: 8784318-8786317 Medicago truncatula
Medtr6g025680 2.0kb downstream 2.0kb downstream 5366 true chr6: 8778952-8784317 Medicago truncatula
Medtr6g025680 2.0kb downstream 2.0kb downstream 2000 false chr6: 8778952-8780951 Medicago truncatula
Medtr6g025680 5.0kb upstream 5.0kb upstream 8366 true chr6: 8780952-8789317 Medicago truncatula
Medtr6g025680 5.0kb upstream 5.0kb upstream 5000 false chr6: 8784318-8789317 Medicago truncatula
Medtr6g025680 5.0kb downstream 5.0kb downstream 8366 true chr6: 8775952-8784317 Medicago truncatula
Medtr6g025680 5.0kb downstream 5.0kb downstream 5000 false chr6: 8775952-8780951 Medicago truncatula
Medtr6g025680 10.0kb upstream 10.0kb upstream 13366 true chr6: 8780952-8794317 Medicago truncatula
Medtr6g025680 10.0kb upstream 10.0kb upstream 10000 false chr6: 8784318-8794317 Medicago truncatula
Medtr6g025680 10.0kb downstream 10.0kb downstream 13366 true chr6: 8770952-8784317 Medicago truncatula
Medtr6g025680 10.0kb downstream 10.0kb downstream 10000 false chr6: 8770952-8780951 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312106 5265 Fabidae View MSA
124062178 5270 Rosid View MSA
123748588 5271 Pentapetalae View MSA
122790006 5272 Eudicot View MSA
122047205 5273 Angiosperm View MSA
121346000 5274 Embryophyte View MSA
123425892 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.035     Low  
cufflinks 0.009     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.022     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.04     Low  
cufflinks 0.011     Low Low
cufflinks 0.059     Low High

0 Strain