Gene : Medtr6g027180 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR12460 - CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN Description:  RNA polymerase II-binding domain protein
Genomic Order:  1230 Name:  ? Medtr6g027180
Secondary Identifier:  ? PAC:31105356
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g027180 0.5kb upstream 0.5kb upstream 12053 true chr6: 9200734-9212786 Medicago truncatula
Medtr6g027180 0.5kb upstream 0.5kb upstream 500 false chr6: 9200734-9201233 Medicago truncatula
Medtr6g027180 0.5kb downstream 0.5kb downstream 12053 true chr6: 9201234-9213286 Medicago truncatula
Medtr6g027180 0.5kb downstream 0.5kb downstream 500 false chr6: 9212787-9213286 Medicago truncatula
Medtr6g027180 1.0kb upstream 1.0kb upstream 12553 true chr6: 9200234-9212786 Medicago truncatula
Medtr6g027180 1.0kb upstream 1.0kb upstream 1000 false chr6: 9200234-9201233 Medicago truncatula
Medtr6g027180 1.0kb downstream 1.0kb downstream 12553 true chr6: 9201234-9213786 Medicago truncatula
Medtr6g027180 1.0kb downstream 1.0kb downstream 1000 false chr6: 9212787-9213786 Medicago truncatula
Medtr6g027180 2.0kb upstream 2.0kb upstream 13553 true chr6: 9199234-9212786 Medicago truncatula
Medtr6g027180 2.0kb upstream 2.0kb upstream 2000 false chr6: 9199234-9201233 Medicago truncatula
Medtr6g027180 2.0kb downstream 2.0kb downstream 13553 true chr6: 9201234-9214786 Medicago truncatula
Medtr6g027180 2.0kb downstream 2.0kb downstream 2000 false chr6: 9212787-9214786 Medicago truncatula
Medtr6g027180 5.0kb upstream 5.0kb upstream 16553 true chr6: 9196234-9212786 Medicago truncatula
Medtr6g027180 5.0kb upstream 5.0kb upstream 5000 false chr6: 9196234-9201233 Medicago truncatula
Medtr6g027180 5.0kb downstream 5.0kb downstream 16553 true chr6: 9201234-9217786 Medicago truncatula
Medtr6g027180 5.0kb downstream 5.0kb downstream 5000 false chr6: 9212787-9217786 Medicago truncatula
Medtr6g027180 10.0kb upstream 10.0kb upstream 21553 true chr6: 9191234-9212786 Medicago truncatula
Medtr6g027180 10.0kb upstream 10.0kb upstream 10000 false chr6: 9191234-9201233 Medicago truncatula
Medtr6g027180 10.0kb downstream 10.0kb downstream 21553 true chr6: 9201234-9222786 Medicago truncatula
Medtr6g027180 10.0kb downstream 10.0kb downstream 10000 false chr6: 9212787-9222786 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302415 5265 Fabidae View MSA
124070749 5270 Rosid View MSA
123742286 5271 Pentapetalae View MSA
122795416 5272 Eudicot View MSA
122049571 5273 Angiosperm View MSA
123428880 5275 Viridiplantae View MSA
121348039 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.316       High
cufflinks 0.911        
cufflinks 0.897        
cufflinks 0.678        
cufflinks 1.165        
cufflinks 0.555       Low
cufflinks 0.85        
cufflinks 0.783        
cufflinks 0.841        

0 Strain