Gene : Medtr6g007763 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR11903//PTHR11903:SF14 - PROSTAGLANDIN G/H SYNTHASE Description:  pathogen-inducible alpha-dioxygenase
Genomic Order:  264 Name:  ? Medtr6g007763
Secondary Identifier:  ? PAC:31101980
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g007763 0.5kb upstream 0.5kb upstream 6365 true chr6: 1922359-1928723 Medicago truncatula
Medtr6g007763 0.5kb upstream 0.5kb upstream 500 false chr6: 1922359-1922858 Medicago truncatula
Medtr6g007763 0.5kb downstream 0.5kb downstream 6365 true chr6: 1922859-1929223 Medicago truncatula
Medtr6g007763 0.5kb downstream 0.5kb downstream 500 false chr6: 1928724-1929223 Medicago truncatula
Medtr6g007763 1.0kb upstream 1.0kb upstream 6865 true chr6: 1921859-1928723 Medicago truncatula
Medtr6g007763 1.0kb upstream 1.0kb upstream 1000 false chr6: 1921859-1922858 Medicago truncatula
Medtr6g007763 1.0kb downstream 1.0kb downstream 6865 true chr6: 1922859-1929723 Medicago truncatula
Medtr6g007763 1.0kb downstream 1.0kb downstream 1000 false chr6: 1928724-1929723 Medicago truncatula
Medtr6g007763 2.0kb upstream 2.0kb upstream 7865 true chr6: 1920859-1928723 Medicago truncatula
Medtr6g007763 2.0kb upstream 2.0kb upstream 2000 false chr6: 1920859-1922858 Medicago truncatula
Medtr6g007763 2.0kb downstream 2.0kb downstream 7865 true chr6: 1922859-1930723 Medicago truncatula
Medtr6g007763 2.0kb downstream 2.0kb downstream 2000 false chr6: 1928724-1930723 Medicago truncatula
Medtr6g007763 5.0kb upstream 5.0kb upstream 10865 true chr6: 1917859-1928723 Medicago truncatula
Medtr6g007763 5.0kb upstream 5.0kb upstream 5000 false chr6: 1917859-1922858 Medicago truncatula
Medtr6g007763 5.0kb downstream 5.0kb downstream 10865 true chr6: 1922859-1933723 Medicago truncatula
Medtr6g007763 5.0kb downstream 5.0kb downstream 5000 false chr6: 1928724-1933723 Medicago truncatula
Medtr6g007763 10.0kb upstream 10.0kb upstream 15865 true chr6: 1912859-1928723 Medicago truncatula
Medtr6g007763 10.0kb upstream 10.0kb upstream 10000 false chr6: 1912859-1922858 Medicago truncatula
Medtr6g007763 10.0kb downstream 10.0kb downstream 15865 true chr6: 1922859-1938723 Medicago truncatula
Medtr6g007763 10.0kb downstream 10.0kb downstream 10000 false chr6: 1928724-1938723 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121627073 5273 Angiosperm Singleton cluster - no MSA
122265208 5265 Fabidae Singleton cluster - no MSA
124006268 5270 Rosid Singleton cluster - no MSA
123580321 5271 Pentapetalae Singleton cluster - no MSA
122615026 5272 Eudicot Singleton cluster - no MSA
120899177 5274 Embryophyte Singleton cluster - no MSA
122939832 5275 Viridiplantae Singleton cluster - no MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.225        
cufflinks 0.13       Low
cufflinks 0.229        
cufflinks 1.748        
cufflinks 0.329        
cufflinks 0.626        
cufflinks 1.92        
cufflinks 0.222        
cufflinks 6.757       High

0 Strain