Gene : Medtr6g011890 M. truncatula Mt4.0v1
Defline:  (1 of 7) PTHR21649:SF26 - CHLOROPHYLL A-B BINDING PROTEIN 1, CHLOROPLASTIC-RELATED Description:  light-harvesting complex I chlorophyll A/B-binding protein
Genomic Order:  455 Name:  ? Medtr6g011890
Secondary Identifier:  ? PAC:31103377
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g011890 0.5kb upstream 0.5kb upstream 1660 true chr6: 3571793-3573452 Medicago truncatula
Medtr6g011890 0.5kb upstream 0.5kb upstream 500 false chr6: 3571793-3572292 Medicago truncatula
Medtr6g011890 0.5kb downstream 0.5kb downstream 1660 true chr6: 3572293-3573952 Medicago truncatula
Medtr6g011890 0.5kb downstream 0.5kb downstream 500 false chr6: 3573453-3573952 Medicago truncatula
Medtr6g011890 1.0kb upstream 1.0kb upstream 2160 true chr6: 3571293-3573452 Medicago truncatula
Medtr6g011890 1.0kb upstream 1.0kb upstream 1000 false chr6: 3571293-3572292 Medicago truncatula
Medtr6g011890 1.0kb downstream 1.0kb downstream 2160 true chr6: 3572293-3574452 Medicago truncatula
Medtr6g011890 1.0kb downstream 1.0kb downstream 1000 false chr6: 3573453-3574452 Medicago truncatula
Medtr6g011890 2.0kb upstream 2.0kb upstream 3160 true chr6: 3570293-3573452 Medicago truncatula
Medtr6g011890 2.0kb upstream 2.0kb upstream 2000 false chr6: 3570293-3572292 Medicago truncatula
Medtr6g011890 2.0kb downstream 2.0kb downstream 3160 true chr6: 3572293-3575452 Medicago truncatula
Medtr6g011890 2.0kb downstream 2.0kb downstream 2000 false chr6: 3573453-3575452 Medicago truncatula
Medtr6g011890 5.0kb upstream 5.0kb upstream 6160 true chr6: 3567293-3573452 Medicago truncatula
Medtr6g011890 5.0kb upstream 5.0kb upstream 5000 false chr6: 3567293-3572292 Medicago truncatula
Medtr6g011890 5.0kb downstream 5.0kb downstream 6160 true chr6: 3572293-3578452 Medicago truncatula
Medtr6g011890 5.0kb downstream 5.0kb downstream 5000 false chr6: 3573453-3578452 Medicago truncatula
Medtr6g011890 10.0kb upstream 10.0kb upstream 11160 true chr6: 3562293-3573452 Medicago truncatula
Medtr6g011890 10.0kb upstream 10.0kb upstream 10000 false chr6: 3562293-3572292 Medicago truncatula
Medtr6g011890 10.0kb downstream 10.0kb downstream 11160 true chr6: 3572293-3583452 Medicago truncatula
Medtr6g011890 10.0kb downstream 10.0kb downstream 10000 false chr6: 3573453-3583452 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314115 5265 Fabidae View MSA
124072480 5270 Rosid View MSA
123751711 5271 Pentapetalae View MSA
122794402 5272 Eudicot View MSA
122050341 5273 Angiosperm View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.94        
cufflinks 554.138     High  
cufflinks 330.926     High  
cufflinks 0.122       Low
cufflinks 719.445     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.057     Low Low
cufflinks 481.739     High  
cufflinks 0.063     Low Low

0 Strain