Gene : Medtr6g013425 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR21145:SF0 - CHORISMATE MUTASE Description:  chorismate mutase
Genomic Order:  549 Name:  ? Medtr6g013425
Secondary Identifier:  ? PAC:31104759
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-3461 Medicago truncatula pathologic  
Mtruncatula PWY-3462 Medicago truncatula pathologic  
Mtruncatula PWY-3481 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g013425 0.5kb upstream 0.5kb upstream 6073 true chr6: 4244913-4250985 Medicago truncatula
Medtr6g013425 0.5kb upstream 0.5kb upstream 500 false chr6: 4250486-4250985 Medicago truncatula
Medtr6g013425 0.5kb downstream 0.5kb downstream 6073 true chr6: 4244413-4250485 Medicago truncatula
Medtr6g013425 0.5kb downstream 0.5kb downstream 500 false chr6: 4244413-4244912 Medicago truncatula
Medtr6g013425 1.0kb upstream 1.0kb upstream 6573 true chr6: 4244913-4251485 Medicago truncatula
Medtr6g013425 1.0kb upstream 1.0kb upstream 1000 false chr6: 4250486-4251485 Medicago truncatula
Medtr6g013425 1.0kb downstream 1.0kb downstream 6573 true chr6: 4243913-4250485 Medicago truncatula
Medtr6g013425 1.0kb downstream 1.0kb downstream 1000 false chr6: 4243913-4244912 Medicago truncatula
Medtr6g013425 2.0kb upstream 2.0kb upstream 7573 true chr6: 4244913-4252485 Medicago truncatula
Medtr6g013425 2.0kb upstream 2.0kb upstream 2000 false chr6: 4250486-4252485 Medicago truncatula
Medtr6g013425 2.0kb downstream 2.0kb downstream 7573 true chr6: 4242913-4250485 Medicago truncatula
Medtr6g013425 2.0kb downstream 2.0kb downstream 2000 false chr6: 4242913-4244912 Medicago truncatula
Medtr6g013425 5.0kb upstream 5.0kb upstream 10573 true chr6: 4244913-4255485 Medicago truncatula
Medtr6g013425 5.0kb upstream 5.0kb upstream 5000 false chr6: 4250486-4255485 Medicago truncatula
Medtr6g013425 5.0kb downstream 5.0kb downstream 10573 true chr6: 4239913-4250485 Medicago truncatula
Medtr6g013425 5.0kb downstream 5.0kb downstream 5000 false chr6: 4239913-4244912 Medicago truncatula
Medtr6g013425 10.0kb upstream 10.0kb upstream 15573 true chr6: 4244913-4260485 Medicago truncatula
Medtr6g013425 10.0kb upstream 10.0kb upstream 10000 false chr6: 4250486-4260485 Medicago truncatula
Medtr6g013425 10.0kb downstream 10.0kb downstream 15573 true chr6: 4234913-4250485 Medicago truncatula
Medtr6g013425 10.0kb downstream 10.0kb downstream 10000 false chr6: 4234913-4244912 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041201 5273 Angiosperm View MSA
122309735 5265 Fabidae View MSA
124071158 5270 Rosid View MSA
123736644 5271 Pentapetalae View MSA
122792454 5272 Eudicot View MSA
121347234 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.854       Low
cufflinks 15.294     High High
cufflinks 8.456        
cufflinks 12.27     High  
cufflinks 15.17     High High
cufflinks 4.68       Low
cufflinks 11.478     High  
cufflinks 11.323     High  
cufflinks 7.665        

0 Strain