Gene : Medtr6g016650 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR13914 - PROLINE OXIDASE Description:  proline dehydrogenase
Genomic Order:  822 Name:  ? Medtr6g016650
Secondary Identifier:  ? PAC:31101935
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PROUT-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g016650 0.5kb upstream 0.5kb upstream 4943 true chr6: 6347139-6352081 Medicago truncatula
Medtr6g016650 0.5kb upstream 0.5kb upstream 500 false chr6: 6351582-6352081 Medicago truncatula
Medtr6g016650 0.5kb downstream 0.5kb downstream 4943 true chr6: 6346639-6351581 Medicago truncatula
Medtr6g016650 0.5kb downstream 0.5kb downstream 500 false chr6: 6346639-6347138 Medicago truncatula
Medtr6g016650 1.0kb upstream 1.0kb upstream 5443 true chr6: 6347139-6352581 Medicago truncatula
Medtr6g016650 1.0kb upstream 1.0kb upstream 1000 false chr6: 6351582-6352581 Medicago truncatula
Medtr6g016650 1.0kb downstream 1.0kb downstream 5443 true chr6: 6346139-6351581 Medicago truncatula
Medtr6g016650 1.0kb downstream 1.0kb downstream 1000 false chr6: 6346139-6347138 Medicago truncatula
Medtr6g016650 2.0kb upstream 2.0kb upstream 6443 true chr6: 6347139-6353581 Medicago truncatula
Medtr6g016650 2.0kb upstream 2.0kb upstream 2000 false chr6: 6351582-6353581 Medicago truncatula
Medtr6g016650 2.0kb downstream 2.0kb downstream 6443 true chr6: 6345139-6351581 Medicago truncatula
Medtr6g016650 2.0kb downstream 2.0kb downstream 2000 false chr6: 6345139-6347138 Medicago truncatula
Medtr6g016650 5.0kb upstream 5.0kb upstream 9443 true chr6: 6347139-6356581 Medicago truncatula
Medtr6g016650 5.0kb upstream 5.0kb upstream 5000 false chr6: 6351582-6356581 Medicago truncatula
Medtr6g016650 5.0kb downstream 5.0kb downstream 9443 true chr6: 6342139-6351581 Medicago truncatula
Medtr6g016650 5.0kb downstream 5.0kb downstream 5000 false chr6: 6342139-6347138 Medicago truncatula
Medtr6g016650 10.0kb upstream 10.0kb upstream 14443 true chr6: 6347139-6361581 Medicago truncatula
Medtr6g016650 10.0kb upstream 10.0kb upstream 10000 false chr6: 6351582-6361581 Medicago truncatula
Medtr6g016650 10.0kb downstream 10.0kb downstream 14443 true chr6: 6337139-6351581 Medicago truncatula
Medtr6g016650 10.0kb downstream 10.0kb downstream 10000 false chr6: 6337139-6347138 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309923 5265 Fabidae View MSA
124068346 5270 Rosid View MSA
123743697 5271 Pentapetalae View MSA
122792525 5272 Eudicot View MSA
122047709 5273 Angiosperm View MSA
121345691 5274 Embryophyte View MSA
123427745 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 91.545     High  
cufflinks 40.809     High  
cufflinks 38.19     High  
cufflinks 21.129     High Low
cufflinks 23.281     High Low
cufflinks 86.123     High  
cufflinks 166.418     High High
cufflinks 64.774     High  
cufflinks 80.57     High  

0 Strain