Gene : Medtr6g016600 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR23076//PTHR23076:SF61 - METALLOPROTEASE M41 FTSH Description:  ATP-dependent zinc metalloprotease FTSH-like protein
Genomic Order:  819 Name:  ? Medtr6g016600
Secondary Identifier:  ? PAC:31105000
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g016600 0.5kb upstream 0.5kb upstream 13605 true chr6: 6297253-6310857 Medicago truncatula
Medtr6g016600 0.5kb upstream 0.5kb upstream 500 false chr6: 6297253-6297752 Medicago truncatula
Medtr6g016600 0.5kb downstream 0.5kb downstream 13605 true chr6: 6297753-6311357 Medicago truncatula
Medtr6g016600 0.5kb downstream 0.5kb downstream 500 false chr6: 6310858-6311357 Medicago truncatula
Medtr6g016600 1.0kb upstream 1.0kb upstream 14105 true chr6: 6296753-6310857 Medicago truncatula
Medtr6g016600 1.0kb upstream 1.0kb upstream 1000 false chr6: 6296753-6297752 Medicago truncatula
Medtr6g016600 1.0kb downstream 1.0kb downstream 14105 true chr6: 6297753-6311857 Medicago truncatula
Medtr6g016600 1.0kb downstream 1.0kb downstream 1000 false chr6: 6310858-6311857 Medicago truncatula
Medtr6g016600 2.0kb upstream 2.0kb upstream 15105 true chr6: 6295753-6310857 Medicago truncatula
Medtr6g016600 2.0kb upstream 2.0kb upstream 2000 false chr6: 6295753-6297752 Medicago truncatula
Medtr6g016600 2.0kb downstream 2.0kb downstream 15105 true chr6: 6297753-6312857 Medicago truncatula
Medtr6g016600 2.0kb downstream 2.0kb downstream 2000 false chr6: 6310858-6312857 Medicago truncatula
Medtr6g016600 5.0kb upstream 5.0kb upstream 18105 true chr6: 6292753-6310857 Medicago truncatula
Medtr6g016600 5.0kb upstream 5.0kb upstream 5000 false chr6: 6292753-6297752 Medicago truncatula
Medtr6g016600 5.0kb downstream 5.0kb downstream 18105 true chr6: 6297753-6315857 Medicago truncatula
Medtr6g016600 5.0kb downstream 5.0kb downstream 5000 false chr6: 6310858-6315857 Medicago truncatula
Medtr6g016600 10.0kb upstream 10.0kb upstream 23105 true chr6: 6287753-6310857 Medicago truncatula
Medtr6g016600 10.0kb upstream 10.0kb upstream 10000 false chr6: 6287753-6297752 Medicago truncatula
Medtr6g016600 10.0kb downstream 10.0kb downstream 23105 true chr6: 6297753-6320857 Medicago truncatula
Medtr6g016600 10.0kb downstream 10.0kb downstream 10000 false chr6: 6310858-6320857 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308691 5265 Fabidae View MSA
124063018 5270 Rosid View MSA
123737747 5271 Pentapetalae View MSA
122793170 5272 Eudicot View MSA
122045675 5273 Angiosperm View MSA
123428918 5275 Viridiplantae View MSA
121344954 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.245        
cufflinks 1.009        
cufflinks 1.331        
cufflinks 0.037     Low Low
cufflinks 1.454        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.096        
cufflinks 1.291        
cufflinks 0.078     Low  

0 Strain