Gene : Medtr6g004070 M. truncatula Mt4.0v1
Defline:  (1 of 2) 2.7.1.91 - Sphinganine kinase / Dihydrosphingosine kinase Description:  sphingoid long-chain bases kinase-like protein
Genomic Order:  13 Name:  ? Medtr6g004070
Secondary Identifier:  ? PAC:31105600
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5129 Medicago truncatula pathologic  
Mtruncatula PWY-6483 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g004070 0.5kb upstream 0.5kb upstream 8789 true chr6: 101737-110525 Medicago truncatula
Medtr6g004070 0.5kb upstream 0.5kb upstream 500 false chr6: 101737-102236 Medicago truncatula
Medtr6g004070 0.5kb downstream 0.5kb downstream 8789 true chr6: 102237-111025 Medicago truncatula
Medtr6g004070 0.5kb downstream 0.5kb downstream 500 false chr6: 110526-111025 Medicago truncatula
Medtr6g004070 1.0kb upstream 1.0kb upstream 9289 true chr6: 101237-110525 Medicago truncatula
Medtr6g004070 1.0kb upstream 1.0kb upstream 1000 false chr6: 101237-102236 Medicago truncatula
Medtr6g004070 1.0kb downstream 1.0kb downstream 9289 true chr6: 102237-111525 Medicago truncatula
Medtr6g004070 1.0kb downstream 1.0kb downstream 1000 false chr6: 110526-111525 Medicago truncatula
Medtr6g004070 2.0kb upstream 2.0kb upstream 10289 true chr6: 100237-110525 Medicago truncatula
Medtr6g004070 2.0kb upstream 2.0kb upstream 2000 false chr6: 100237-102236 Medicago truncatula
Medtr6g004070 2.0kb downstream 2.0kb downstream 10289 true chr6: 102237-112525 Medicago truncatula
Medtr6g004070 2.0kb downstream 2.0kb downstream 2000 false chr6: 110526-112525 Medicago truncatula
Medtr6g004070 5.0kb upstream 5.0kb upstream 13289 true chr6: 97237-110525 Medicago truncatula
Medtr6g004070 5.0kb upstream 5.0kb upstream 5000 false chr6: 97237-102236 Medicago truncatula
Medtr6g004070 5.0kb downstream 5.0kb downstream 13289 true chr6: 102237-115525 Medicago truncatula
Medtr6g004070 5.0kb downstream 5.0kb downstream 5000 false chr6: 110526-115525 Medicago truncatula
Medtr6g004070 10.0kb upstream 10.0kb upstream 18289 true chr6: 92237-110525 Medicago truncatula
Medtr6g004070 10.0kb upstream 10.0kb upstream 10000 false chr6: 92237-102236 Medicago truncatula
Medtr6g004070 10.0kb downstream 10.0kb downstream 18289 true chr6: 102237-120525 Medicago truncatula
Medtr6g004070 10.0kb downstream 10.0kb downstream 10000 false chr6: 110526-120525 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302965 5265 Fabidae View MSA
124074924 5270 Rosid View MSA
123752126 5271 Pentapetalae View MSA
122793643 5272 Eudicot View MSA
122046814 5273 Angiosperm View MSA
121349004 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.839        
cufflinks 4.787        
cufflinks 4.449        
cufflinks 2.143        
cufflinks 4.574        
cufflinks 1.01       Low
cufflinks 2.962        
cufflinks 4.109        
cufflinks 3.35        

0 Strain