Gene : Medtr6g005960 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR22981//PTHR22981:SF77 - 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED Description:  PWWP domain protein
Genomic Order:  130 Name:  ? Medtr6g005960
Secondary Identifier:  ? PAC:31104894
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g005960 0.5kb upstream 0.5kb upstream 3401 true chr6: 915636-919036 Medicago truncatula
Medtr6g005960 0.5kb upstream 0.5kb upstream 500 false chr6: 918537-919036 Medicago truncatula
Medtr6g005960 0.5kb downstream 0.5kb downstream 3401 true chr6: 915136-918536 Medicago truncatula
Medtr6g005960 0.5kb downstream 0.5kb downstream 500 false chr6: 915136-915635 Medicago truncatula
Medtr6g005960 1.0kb upstream 1.0kb upstream 3901 true chr6: 915636-919536 Medicago truncatula
Medtr6g005960 1.0kb upstream 1.0kb upstream 1000 false chr6: 918537-919536 Medicago truncatula
Medtr6g005960 1.0kb downstream 1.0kb downstream 3901 true chr6: 914636-918536 Medicago truncatula
Medtr6g005960 1.0kb downstream 1.0kb downstream 1000 false chr6: 914636-915635 Medicago truncatula
Medtr6g005960 2.0kb upstream 2.0kb upstream 4901 true chr6: 915636-920536 Medicago truncatula
Medtr6g005960 2.0kb upstream 2.0kb upstream 2000 false chr6: 918537-920536 Medicago truncatula
Medtr6g005960 2.0kb downstream 2.0kb downstream 4901 true chr6: 913636-918536 Medicago truncatula
Medtr6g005960 2.0kb downstream 2.0kb downstream 2000 false chr6: 913636-915635 Medicago truncatula
Medtr6g005960 5.0kb upstream 5.0kb upstream 7901 true chr6: 915636-923536 Medicago truncatula
Medtr6g005960 5.0kb upstream 5.0kb upstream 5000 false chr6: 918537-923536 Medicago truncatula
Medtr6g005960 5.0kb downstream 5.0kb downstream 7901 true chr6: 910636-918536 Medicago truncatula
Medtr6g005960 5.0kb downstream 5.0kb downstream 5000 false chr6: 910636-915635 Medicago truncatula
Medtr6g005960 10.0kb upstream 10.0kb upstream 12901 true chr6: 915636-928536 Medicago truncatula
Medtr6g005960 10.0kb upstream 10.0kb upstream 10000 false chr6: 918537-928536 Medicago truncatula
Medtr6g005960 10.0kb downstream 10.0kb downstream 12901 true chr6: 905636-918536 Medicago truncatula
Medtr6g005960 10.0kb downstream 10.0kb downstream 10000 false chr6: 905636-915635 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303894 5265 Fabidae View MSA
124072008 5270 Rosid View MSA
123749922 5271 Pentapetalae View MSA
122795074 5272 Eudicot View MSA
122049561 5273 Angiosperm View MSA
121311475 5274 Embryophyte View MSA
123348768 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.529     High  
cufflinks 9.613     High  
cufflinks 13.887     High High
cufflinks 3.042       Low
cufflinks 11.167     High  
cufflinks 4.67        
cufflinks 5.588        
cufflinks 12.133     High  
cufflinks 5.539        

0 Strain