Gene : Medtr5g093440 M. truncatula Mt4.0v1
Defline:  (1 of 50) PF05553 - Cotton fibre expressed protein (DUF761) Description:  DUF4408 domain protein
Genomic Order:  5385 Name:  ? Medtr5g093440
Secondary Identifier:  ? PAC:31091224
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g093440 0.5kb upstream 0.5kb upstream 1339 true chr5: 40792692-40794030 Medicago truncatula
Medtr5g093440 0.5kb upstream 0.5kb upstream 500 false chr5: 40792692-40793191 Medicago truncatula
Medtr5g093440 0.5kb downstream 0.5kb downstream 1339 true chr5: 40793192-40794530 Medicago truncatula
Medtr5g093440 0.5kb downstream 0.5kb downstream 500 false chr5: 40794031-40794530 Medicago truncatula
Medtr5g093440 1.0kb upstream 1.0kb upstream 1839 true chr5: 40792192-40794030 Medicago truncatula
Medtr5g093440 1.0kb upstream 1.0kb upstream 1000 false chr5: 40792192-40793191 Medicago truncatula
Medtr5g093440 1.0kb downstream 1.0kb downstream 1839 true chr5: 40793192-40795030 Medicago truncatula
Medtr5g093440 1.0kb downstream 1.0kb downstream 1000 false chr5: 40794031-40795030 Medicago truncatula
Medtr5g093440 2.0kb upstream 2.0kb upstream 2839 true chr5: 40791192-40794030 Medicago truncatula
Medtr5g093440 2.0kb upstream 2.0kb upstream 2000 false chr5: 40791192-40793191 Medicago truncatula
Medtr5g093440 2.0kb downstream 2.0kb downstream 2839 true chr5: 40793192-40796030 Medicago truncatula
Medtr5g093440 2.0kb downstream 2.0kb downstream 2000 false chr5: 40794031-40796030 Medicago truncatula
Medtr5g093440 5.0kb upstream 5.0kb upstream 5839 true chr5: 40788192-40794030 Medicago truncatula
Medtr5g093440 5.0kb upstream 5.0kb upstream 5000 false chr5: 40788192-40793191 Medicago truncatula
Medtr5g093440 5.0kb downstream 5.0kb downstream 5839 true chr5: 40793192-40799030 Medicago truncatula
Medtr5g093440 5.0kb downstream 5.0kb downstream 5000 false chr5: 40794031-40799030 Medicago truncatula
Medtr5g093440 10.0kb upstream 10.0kb upstream 10839 true chr5: 40783192-40794030 Medicago truncatula
Medtr5g093440 10.0kb upstream 10.0kb upstream 10000 false chr5: 40783192-40793191 Medicago truncatula
Medtr5g093440 10.0kb downstream 10.0kb downstream 10839 true chr5: 40793192-40804030 Medicago truncatula
Medtr5g093440 10.0kb downstream 10.0kb downstream 10000 false chr5: 40794031-40804030 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313884 5265 Fabidae View MSA
124070125 5270 Rosid View MSA
123742485 5271 Pentapetalae View MSA
122795207 5272 Eudicot View MSA
122049562 5273 Angiosperm View MSA
121311476 5274 Embryophyte View MSA
123348769 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.667        
cufflinks 3.33        
cufflinks 2.931        
cufflinks 47.388     High High
cufflinks 1.641       Low
cufflinks 7.464        
cufflinks 34.663     High High
cufflinks 3.631        
cufflinks 18.325     High  

0 Strain