Gene : Medtr5g094930 M. truncatula Mt4.0v1
Defline:  (1 of 14) PF00124 - Photosynthetic reaction centre protein (Photo_RC) Description:  photosystem II reaction center protein
Genomic Order:  5502 Name:  ? Medtr5g094930
Secondary Identifier:  ? PAC:31089539
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-101 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g094930 0.5kb upstream 0.5kb upstream 869 true chr5: 41504550-41505418 Medicago truncatula
Medtr5g094930 0.5kb upstream 0.5kb upstream 500 false chr5: 41504550-41505049 Medicago truncatula
Medtr5g094930 0.5kb downstream 0.5kb downstream 869 true chr5: 41505050-41505918 Medicago truncatula
Medtr5g094930 0.5kb downstream 0.5kb downstream 500 false chr5: 41505419-41505918 Medicago truncatula
Medtr5g094930 1.0kb upstream 1.0kb upstream 1369 true chr5: 41504050-41505418 Medicago truncatula
Medtr5g094930 1.0kb upstream 1.0kb upstream 1000 false chr5: 41504050-41505049 Medicago truncatula
Medtr5g094930 1.0kb downstream 1.0kb downstream 1369 true chr5: 41505050-41506418 Medicago truncatula
Medtr5g094930 1.0kb downstream 1.0kb downstream 1000 false chr5: 41505419-41506418 Medicago truncatula
Medtr5g094930 2.0kb upstream 2.0kb upstream 2369 true chr5: 41503050-41505418 Medicago truncatula
Medtr5g094930 2.0kb upstream 2.0kb upstream 2000 false chr5: 41503050-41505049 Medicago truncatula
Medtr5g094930 2.0kb downstream 2.0kb downstream 2369 true chr5: 41505050-41507418 Medicago truncatula
Medtr5g094930 2.0kb downstream 2.0kb downstream 2000 false chr5: 41505419-41507418 Medicago truncatula
Medtr5g094930 5.0kb upstream 5.0kb upstream 5369 true chr5: 41500050-41505418 Medicago truncatula
Medtr5g094930 5.0kb upstream 5.0kb upstream 5000 false chr5: 41500050-41505049 Medicago truncatula
Medtr5g094930 5.0kb downstream 5.0kb downstream 5369 true chr5: 41505050-41510418 Medicago truncatula
Medtr5g094930 5.0kb downstream 5.0kb downstream 5000 false chr5: 41505419-41510418 Medicago truncatula
Medtr5g094930 10.0kb upstream 10.0kb upstream 10369 true chr5: 41495050-41505418 Medicago truncatula
Medtr5g094930 10.0kb upstream 10.0kb upstream 10000 false chr5: 41495050-41505049 Medicago truncatula
Medtr5g094930 10.0kb downstream 10.0kb downstream 10369 true chr5: 41505050-41515418 Medicago truncatula
Medtr5g094930 10.0kb downstream 10.0kb downstream 10000 false chr5: 41505419-41515418 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122264383 5265 Fabidae Singleton cluster - no MSA
124074862 5270 Rosid View MSA
123753260 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.081        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.027     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain