Gene : Medtr5g096030 M. truncatula Mt4.0v1
Defline:  (1 of 12) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Description:  RPM1-interacting protein 4 (RIN4) family protein
Genomic Order:  5590 Name:  ? Medtr5g096030
Secondary Identifier:  ? PAC:31089384
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g096030 0.5kb upstream 0.5kb upstream 3003 true chr5: 41984100-41987102 Medicago truncatula
Medtr5g096030 0.5kb upstream 0.5kb upstream 500 false chr5: 41984100-41984599 Medicago truncatula
Medtr5g096030 0.5kb downstream 0.5kb downstream 3003 true chr5: 41984600-41987602 Medicago truncatula
Medtr5g096030 0.5kb downstream 0.5kb downstream 500 false chr5: 41987103-41987602 Medicago truncatula
Medtr5g096030 1.0kb upstream 1.0kb upstream 3503 true chr5: 41983600-41987102 Medicago truncatula
Medtr5g096030 1.0kb upstream 1.0kb upstream 1000 false chr5: 41983600-41984599 Medicago truncatula
Medtr5g096030 1.0kb downstream 1.0kb downstream 3503 true chr5: 41984600-41988102 Medicago truncatula
Medtr5g096030 1.0kb downstream 1.0kb downstream 1000 false chr5: 41987103-41988102 Medicago truncatula
Medtr5g096030 2.0kb upstream 2.0kb upstream 4503 true chr5: 41982600-41987102 Medicago truncatula
Medtr5g096030 2.0kb upstream 2.0kb upstream 2000 false chr5: 41982600-41984599 Medicago truncatula
Medtr5g096030 2.0kb downstream 2.0kb downstream 4503 true chr5: 41984600-41989102 Medicago truncatula
Medtr5g096030 2.0kb downstream 2.0kb downstream 2000 false chr5: 41987103-41989102 Medicago truncatula
Medtr5g096030 5.0kb upstream 5.0kb upstream 7503 true chr5: 41979600-41987102 Medicago truncatula
Medtr5g096030 5.0kb upstream 5.0kb upstream 5000 false chr5: 41979600-41984599 Medicago truncatula
Medtr5g096030 5.0kb downstream 5.0kb downstream 7503 true chr5: 41984600-41992102 Medicago truncatula
Medtr5g096030 5.0kb downstream 5.0kb downstream 5000 false chr5: 41987103-41992102 Medicago truncatula
Medtr5g096030 10.0kb upstream 10.0kb upstream 12503 true chr5: 41974600-41987102 Medicago truncatula
Medtr5g096030 10.0kb upstream 10.0kb upstream 10000 false chr5: 41974600-41984599 Medicago truncatula
Medtr5g096030 10.0kb downstream 10.0kb downstream 12503 true chr5: 41984600-41997102 Medicago truncatula
Medtr5g096030 10.0kb downstream 10.0kb downstream 10000 false chr5: 41987103-41997102 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312019 5265 Fabidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.507     High Low
cufflinks 16.868     High  
cufflinks 15.371     High  
cufflinks 25.995     High High
cufflinks 13.946     High  
cufflinks 14.543     High  
cufflinks 19.935     High  
cufflinks 14.046     High  
cufflinks 21.053     High  

0 Strain