Gene : Medtr5g096200 M. truncatula Mt4.0v1
Defline:  (1 of 6) PTHR22601:SF8 - OLIGOPEPTIDE TRANSPORTER 1-RELATED Description:  oligopeptide transporter OPT family protein
Genomic Order:  5600 Name:  ? Medtr5g096200
Secondary Identifier:  ? PAC:31085795
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g096200 0.5kb upstream 0.5kb upstream 6641 true chr5: 42054465-42061105 Medicago truncatula
Medtr5g096200 0.5kb upstream 0.5kb upstream 500 false chr5: 42054465-42054964 Medicago truncatula
Medtr5g096200 0.5kb downstream 0.5kb downstream 6641 true chr5: 42054965-42061605 Medicago truncatula
Medtr5g096200 0.5kb downstream 0.5kb downstream 500 false chr5: 42061106-42061605 Medicago truncatula
Medtr5g096200 1.0kb upstream 1.0kb upstream 7141 true chr5: 42053965-42061105 Medicago truncatula
Medtr5g096200 1.0kb upstream 1.0kb upstream 1000 false chr5: 42053965-42054964 Medicago truncatula
Medtr5g096200 1.0kb downstream 1.0kb downstream 7141 true chr5: 42054965-42062105 Medicago truncatula
Medtr5g096200 1.0kb downstream 1.0kb downstream 1000 false chr5: 42061106-42062105 Medicago truncatula
Medtr5g096200 2.0kb upstream 2.0kb upstream 8141 true chr5: 42052965-42061105 Medicago truncatula
Medtr5g096200 2.0kb upstream 2.0kb upstream 2000 false chr5: 42052965-42054964 Medicago truncatula
Medtr5g096200 2.0kb downstream 2.0kb downstream 8141 true chr5: 42054965-42063105 Medicago truncatula
Medtr5g096200 2.0kb downstream 2.0kb downstream 2000 false chr5: 42061106-42063105 Medicago truncatula
Medtr5g096200 5.0kb upstream 5.0kb upstream 11141 true chr5: 42049965-42061105 Medicago truncatula
Medtr5g096200 5.0kb upstream 5.0kb upstream 5000 false chr5: 42049965-42054964 Medicago truncatula
Medtr5g096200 5.0kb downstream 5.0kb downstream 11141 true chr5: 42054965-42066105 Medicago truncatula
Medtr5g096200 5.0kb downstream 5.0kb downstream 5000 false chr5: 42061106-42066105 Medicago truncatula
Medtr5g096200 10.0kb upstream 10.0kb upstream 16141 true chr5: 42044965-42061105 Medicago truncatula
Medtr5g096200 10.0kb upstream 10.0kb upstream 10000 false chr5: 42044965-42054964 Medicago truncatula
Medtr5g096200 10.0kb downstream 10.0kb downstream 16141 true chr5: 42054965-42071105 Medicago truncatula
Medtr5g096200 10.0kb downstream 10.0kb downstream 10000 false chr5: 42061106-42071105 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309897 5265 Fabidae View MSA
124065533 5270 Rosid View MSA
123750200 5271 Pentapetalae View MSA
122797569 5272 Eudicot View MSA
122049856 5273 Angiosperm View MSA
121351141 5274 Embryophyte View MSA
123382023 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.183        
cufflinks 0.285        
cufflinks 0.31        
cufflinks 0.098       Low
cufflinks 0.241        
cufflinks 0.197        
cufflinks 0.423       High
cufflinks 0.252        
cufflinks 0.374        

0 Strain