Gene : Medtr5g096020 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR22807:SF30 - RIBOSOMAL RNA METHYLTRANSFERASE NOP2-RELATED Description:  ribosomal RNA small subunit methyltransferase B
Genomic Order:  5589 Name:  ? Medtr5g096020
Secondary Identifier:  ? PAC:31091051
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g096020 0.5kb upstream 0.5kb upstream 7544 true chr5: 41975357-41982900 Medicago truncatula
Medtr5g096020 0.5kb upstream 0.5kb upstream 500 false chr5: 41982401-41982900 Medicago truncatula
Medtr5g096020 0.5kb downstream 0.5kb downstream 7544 true chr5: 41974857-41982400 Medicago truncatula
Medtr5g096020 0.5kb downstream 0.5kb downstream 500 false chr5: 41974857-41975356 Medicago truncatula
Medtr5g096020 1.0kb upstream 1.0kb upstream 8044 true chr5: 41975357-41983400 Medicago truncatula
Medtr5g096020 1.0kb upstream 1.0kb upstream 1000 false chr5: 41982401-41983400 Medicago truncatula
Medtr5g096020 1.0kb downstream 1.0kb downstream 8044 true chr5: 41974357-41982400 Medicago truncatula
Medtr5g096020 1.0kb downstream 1.0kb downstream 1000 false chr5: 41974357-41975356 Medicago truncatula
Medtr5g096020 2.0kb upstream 2.0kb upstream 9044 true chr5: 41975357-41984400 Medicago truncatula
Medtr5g096020 2.0kb upstream 2.0kb upstream 2000 false chr5: 41982401-41984400 Medicago truncatula
Medtr5g096020 2.0kb downstream 2.0kb downstream 9044 true chr5: 41973357-41982400 Medicago truncatula
Medtr5g096020 2.0kb downstream 2.0kb downstream 2000 false chr5: 41973357-41975356 Medicago truncatula
Medtr5g096020 5.0kb upstream 5.0kb upstream 12044 true chr5: 41975357-41987400 Medicago truncatula
Medtr5g096020 5.0kb upstream 5.0kb upstream 5000 false chr5: 41982401-41987400 Medicago truncatula
Medtr5g096020 5.0kb downstream 5.0kb downstream 12044 true chr5: 41970357-41982400 Medicago truncatula
Medtr5g096020 5.0kb downstream 5.0kb downstream 5000 false chr5: 41970357-41975356 Medicago truncatula
Medtr5g096020 10.0kb upstream 10.0kb upstream 17044 true chr5: 41975357-41992400 Medicago truncatula
Medtr5g096020 10.0kb upstream 10.0kb upstream 10000 false chr5: 41982401-41992400 Medicago truncatula
Medtr5g096020 10.0kb downstream 10.0kb downstream 17044 true chr5: 41965357-41982400 Medicago truncatula
Medtr5g096020 10.0kb downstream 10.0kb downstream 10000 false chr5: 41965357-41975356 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306410 5265 Fabidae View MSA
124073549 5270 Rosid View MSA
123740047 5271 Pentapetalae View MSA
122787436 5272 Eudicot View MSA
122043907 5273 Angiosperm View MSA
121346553 5274 Embryophyte View MSA
123427921 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.452        
cufflinks 1.603        
cufflinks 2.001        
cufflinks 0.093       Low
cufflinks 3.522       High
cufflinks 0.316        
cufflinks 0.27        
cufflinks 2.259        
cufflinks 0.166       Low

0 Strain