Gene : Medtr5g097890 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR23198:SF0 - NUCLEAR PORE COMPLEX PROTEIN NUP96 HOMOLOG Description:  suppressor OF AUXIN resistance protein
Genomic Order:  5724 Name:  ? Medtr5g097890
Secondary Identifier:  ? PAC:31090572
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g097890 0.5kb upstream 0.5kb upstream 7664 true chr5: 42866232-42873895 Medicago truncatula
Medtr5g097890 0.5kb upstream 0.5kb upstream 500 false chr5: 42866232-42866731 Medicago truncatula
Medtr5g097890 0.5kb downstream 0.5kb downstream 7664 true chr5: 42866732-42874395 Medicago truncatula
Medtr5g097890 0.5kb downstream 0.5kb downstream 500 false chr5: 42873896-42874395 Medicago truncatula
Medtr5g097890 1.0kb upstream 1.0kb upstream 8164 true chr5: 42865732-42873895 Medicago truncatula
Medtr5g097890 1.0kb upstream 1.0kb upstream 1000 false chr5: 42865732-42866731 Medicago truncatula
Medtr5g097890 1.0kb downstream 1.0kb downstream 8164 true chr5: 42866732-42874895 Medicago truncatula
Medtr5g097890 1.0kb downstream 1.0kb downstream 1000 false chr5: 42873896-42874895 Medicago truncatula
Medtr5g097890 2.0kb upstream 2.0kb upstream 9164 true chr5: 42864732-42873895 Medicago truncatula
Medtr5g097890 2.0kb upstream 2.0kb upstream 2000 false chr5: 42864732-42866731 Medicago truncatula
Medtr5g097890 2.0kb downstream 2.0kb downstream 9164 true chr5: 42866732-42875895 Medicago truncatula
Medtr5g097890 2.0kb downstream 2.0kb downstream 2000 false chr5: 42873896-42875895 Medicago truncatula
Medtr5g097890 5.0kb upstream 5.0kb upstream 12164 true chr5: 42861732-42873895 Medicago truncatula
Medtr5g097890 5.0kb upstream 5.0kb upstream 5000 false chr5: 42861732-42866731 Medicago truncatula
Medtr5g097890 5.0kb downstream 5.0kb downstream 12164 true chr5: 42866732-42878895 Medicago truncatula
Medtr5g097890 5.0kb downstream 5.0kb downstream 5000 false chr5: 42873896-42878895 Medicago truncatula
Medtr5g097890 10.0kb upstream 10.0kb upstream 17164 true chr5: 42856732-42873895 Medicago truncatula
Medtr5g097890 10.0kb upstream 10.0kb upstream 10000 false chr5: 42856732-42866731 Medicago truncatula
Medtr5g097890 10.0kb downstream 10.0kb downstream 17164 true chr5: 42866732-42883895 Medicago truncatula
Medtr5g097890 10.0kb downstream 10.0kb downstream 10000 false chr5: 42873896-42883895 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306692 5265 Fabidae View MSA
124062118 5270 Rosid View MSA
123738828 5271 Pentapetalae View MSA
122786921 5272 Eudicot View MSA
122043247 5273 Angiosperm View MSA
121310093 5274 Embryophyte View MSA
123347679 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.138        
cufflinks 6.565        
cufflinks 6.981        
cufflinks 1.602       Low
cufflinks 8.387       High
cufflinks 1.32       Low
cufflinks 3.497        
cufflinks 6.165        
cufflinks 3.467        

0 Strain