Gene : Medtr5g098770 M. truncatula Mt4.0v1

Defline:  (1 of 2) PTHR21649:SF14 - PSI TYPE III CHLOROPHYLL A/B-BINDING PROTEIN Description:  light-harvesting complex I chlorophyll A/B-binding protein
Genomic Order:  5785 Name:  ? Medtr5g098770
Secondary Identifier:  ? PAC:31090152

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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g098770 0.5kb upstream 0.5kb upstream 785 true chr5: 43247634-43248418 Medicago truncatula
Medtr5g098770 0.5kb upstream 0.5kb upstream 500 false chr5: 43247919-43248418 Medicago truncatula
Medtr5g098770 0.5kb downstream 0.5kb downstream 785 true chr5: 43247134-43247918 Medicago truncatula
Medtr5g098770 0.5kb downstream 0.5kb downstream 500 false chr5: 43247134-43247633 Medicago truncatula
Medtr5g098770 1.0kb upstream 1.0kb upstream 1285 true chr5: 43247634-43248918 Medicago truncatula
Medtr5g098770 1.0kb upstream 1.0kb upstream 1000 false chr5: 43247919-43248918 Medicago truncatula
Medtr5g098770 1.0kb downstream 1.0kb downstream 1285 true chr5: 43246634-43247918 Medicago truncatula
Medtr5g098770 1.0kb downstream 1.0kb downstream 1000 false chr5: 43246634-43247633 Medicago truncatula
Medtr5g098770 2.0kb upstream 2.0kb upstream 2285 true chr5: 43247634-43249918 Medicago truncatula
Medtr5g098770 2.0kb upstream 2.0kb upstream 2000 false chr5: 43247919-43249918 Medicago truncatula
Medtr5g098770 2.0kb downstream 2.0kb downstream 2285 true chr5: 43245634-43247918 Medicago truncatula
Medtr5g098770 2.0kb downstream 2.0kb downstream 2000 false chr5: 43245634-43247633 Medicago truncatula
Medtr5g098770 5.0kb upstream 5.0kb upstream 5285 true chr5: 43247634-43252918 Medicago truncatula
Medtr5g098770 5.0kb upstream 5.0kb upstream 5000 false chr5: 43247919-43252918 Medicago truncatula
Medtr5g098770 5.0kb downstream 5.0kb downstream 5285 true chr5: 43242634-43247918 Medicago truncatula
Medtr5g098770 5.0kb downstream 5.0kb downstream 5000 false chr5: 43242634-43247633 Medicago truncatula
Medtr5g098770 10.0kb upstream 10.0kb upstream 10285 true chr5: 43247634-43257918 Medicago truncatula
Medtr5g098770 10.0kb upstream 10.0kb upstream 10000 false chr5: 43247919-43257918 Medicago truncatula
Medtr5g098770 10.0kb downstream 10.0kb downstream 10285 true chr5: 43237634-43247918 Medicago truncatula
Medtr5g098770 10.0kb downstream 10.0kb downstream 10000 false chr5: 43237634-43247633 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122288462 5265 Fabidae View MSA
124051137 5270 Rosid View MSA
123751711 5271 Pentapetalae View MSA
122794402 5272 Eudicot View MSA
122050341 5273 Angiosperm View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.075        
cufflinks 0.267       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.058     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain