Gene : Medtr6g082180 M. truncatula Mt4.0v1
Defline:  (1 of 9) PTHR22814:SF34 - COPPER TRANSPORT PROTEIN-RELATED Description:  hypothetical protein
Genomic Order:  3315 Name:  ? Medtr6g082180
Secondary Identifier:  ? PAC:31102392
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g082180 0.5kb upstream 0.5kb upstream 2075 true chr6: 30681476-30683550 Medicago truncatula
Medtr6g082180 0.5kb upstream 0.5kb upstream 500 false chr6: 30681476-30681975 Medicago truncatula
Medtr6g082180 0.5kb downstream 0.5kb downstream 2075 true chr6: 30681976-30684050 Medicago truncatula
Medtr6g082180 0.5kb downstream 0.5kb downstream 500 false chr6: 30683551-30684050 Medicago truncatula
Medtr6g082180 1.0kb upstream 1.0kb upstream 2575 true chr6: 30680976-30683550 Medicago truncatula
Medtr6g082180 1.0kb upstream 1.0kb upstream 1000 false chr6: 30680976-30681975 Medicago truncatula
Medtr6g082180 1.0kb downstream 1.0kb downstream 2575 true chr6: 30681976-30684550 Medicago truncatula
Medtr6g082180 1.0kb downstream 1.0kb downstream 1000 false chr6: 30683551-30684550 Medicago truncatula
Medtr6g082180 2.0kb upstream 2.0kb upstream 3575 true chr6: 30679976-30683550 Medicago truncatula
Medtr6g082180 2.0kb upstream 2.0kb upstream 2000 false chr6: 30679976-30681975 Medicago truncatula
Medtr6g082180 2.0kb downstream 2.0kb downstream 3575 true chr6: 30681976-30685550 Medicago truncatula
Medtr6g082180 2.0kb downstream 2.0kb downstream 2000 false chr6: 30683551-30685550 Medicago truncatula
Medtr6g082180 5.0kb upstream 5.0kb upstream 6575 true chr6: 30676976-30683550 Medicago truncatula
Medtr6g082180 5.0kb upstream 5.0kb upstream 5000 false chr6: 30676976-30681975 Medicago truncatula
Medtr6g082180 5.0kb downstream 5.0kb downstream 6575 true chr6: 30681976-30688550 Medicago truncatula
Medtr6g082180 5.0kb downstream 5.0kb downstream 5000 false chr6: 30683551-30688550 Medicago truncatula
Medtr6g082180 10.0kb upstream 10.0kb upstream 11575 true chr6: 30671976-30683550 Medicago truncatula
Medtr6g082180 10.0kb upstream 10.0kb upstream 10000 false chr6: 30671976-30681975 Medicago truncatula
Medtr6g082180 10.0kb downstream 10.0kb downstream 11575 true chr6: 30681976-30693550 Medicago truncatula
Medtr6g082180 10.0kb downstream 10.0kb downstream 10000 false chr6: 30683551-30693550 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122265350 5265 Fabidae Singleton cluster - no MSA
124072357 5270 Rosid View MSA
123753587 5271 Pentapetalae View MSA
122796697 5272 Eudicot View MSA
122051560 5273 Angiosperm View MSA
121351529 5274 Embryophyte View MSA
123424750 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.2       High
cufflinks 0.008     Low Low
cufflinks 0.005     Low Low
cufflinks 0.227       High
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.099        
cufflinks 0.018     Low  
cufflinks 0.144        

0 Strain