Gene : Medtr6g086635 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR12161:SF14 - REGULATOR OF VPS4 Description:  regulator of Vps4 activity in the MVB pathway protein
Genomic Order:  3543 Name:  ? Medtr6g086635
Secondary Identifier:  ? PAC:31103261
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g086635 0.5kb upstream 0.5kb upstream 6361 true chr6: 32605057-32611417 Medicago truncatula
Medtr6g086635 0.5kb upstream 0.5kb upstream 500 false chr6: 32610918-32611417 Medicago truncatula
Medtr6g086635 0.5kb downstream 0.5kb downstream 6361 true chr6: 32604557-32610917 Medicago truncatula
Medtr6g086635 0.5kb downstream 0.5kb downstream 500 false chr6: 32604557-32605056 Medicago truncatula
Medtr6g086635 1.0kb upstream 1.0kb upstream 6861 true chr6: 32605057-32611917 Medicago truncatula
Medtr6g086635 1.0kb upstream 1.0kb upstream 1000 false chr6: 32610918-32611917 Medicago truncatula
Medtr6g086635 1.0kb downstream 1.0kb downstream 6861 true chr6: 32604057-32610917 Medicago truncatula
Medtr6g086635 1.0kb downstream 1.0kb downstream 1000 false chr6: 32604057-32605056 Medicago truncatula
Medtr6g086635 2.0kb upstream 2.0kb upstream 7861 true chr6: 32605057-32612917 Medicago truncatula
Medtr6g086635 2.0kb upstream 2.0kb upstream 2000 false chr6: 32610918-32612917 Medicago truncatula
Medtr6g086635 2.0kb downstream 2.0kb downstream 7861 true chr6: 32603057-32610917 Medicago truncatula
Medtr6g086635 2.0kb downstream 2.0kb downstream 2000 false chr6: 32603057-32605056 Medicago truncatula
Medtr6g086635 5.0kb upstream 5.0kb upstream 10861 true chr6: 32605057-32615917 Medicago truncatula
Medtr6g086635 5.0kb upstream 5.0kb upstream 5000 false chr6: 32610918-32615917 Medicago truncatula
Medtr6g086635 5.0kb downstream 5.0kb downstream 10861 true chr6: 32600057-32610917 Medicago truncatula
Medtr6g086635 5.0kb downstream 5.0kb downstream 5000 false chr6: 32600057-32605056 Medicago truncatula
Medtr6g086635 10.0kb upstream 10.0kb upstream 15861 true chr6: 32605057-32620917 Medicago truncatula
Medtr6g086635 10.0kb upstream 10.0kb upstream 10000 false chr6: 32610918-32620917 Medicago truncatula
Medtr6g086635 10.0kb downstream 10.0kb downstream 15861 true chr6: 32595057-32610917 Medicago truncatula
Medtr6g086635 10.0kb downstream 10.0kb downstream 10000 false chr6: 32595057-32605056 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299571 5265 Fabidae View MSA
124066649 5270 Rosid View MSA
123746994 5271 Pentapetalae View MSA
122787378 5272 Eudicot View MSA
122041860 5273 Angiosperm View MSA
121351542 5274 Embryophyte View MSA
123382216 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.997        
cufflinks 6.642        
cufflinks 10.26     High High
cufflinks 2.298       Low
cufflinks 5.974        
cufflinks 2.714       Low
cufflinks 5.536        
cufflinks 7.645        
cufflinks 6.373        

0 Strain