Gene : Medtr6g086270 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11361:SF31 - DNA MISMATCH REPAIR PROTEIN MSH6 Description:  DNA mismatch repair protein msh6
Genomic Order:  3516 Name:  ? Medtr6g086270
Secondary Identifier:  ? PAC:31105541
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g086270 0.5kb upstream 0.5kb upstream 9442 true chr6: 32378956-32388397 Medicago truncatula
Medtr6g086270 0.5kb upstream 0.5kb upstream 500 false chr6: 32387898-32388397 Medicago truncatula
Medtr6g086270 0.5kb downstream 0.5kb downstream 9442 true chr6: 32378456-32387897 Medicago truncatula
Medtr6g086270 0.5kb downstream 0.5kb downstream 500 false chr6: 32378456-32378955 Medicago truncatula
Medtr6g086270 1.0kb upstream 1.0kb upstream 9942 true chr6: 32378956-32388897 Medicago truncatula
Medtr6g086270 1.0kb upstream 1.0kb upstream 1000 false chr6: 32387898-32388897 Medicago truncatula
Medtr6g086270 1.0kb downstream 1.0kb downstream 9942 true chr6: 32377956-32387897 Medicago truncatula
Medtr6g086270 1.0kb downstream 1.0kb downstream 1000 false chr6: 32377956-32378955 Medicago truncatula
Medtr6g086270 2.0kb upstream 2.0kb upstream 10942 true chr6: 32378956-32389897 Medicago truncatula
Medtr6g086270 2.0kb upstream 2.0kb upstream 2000 false chr6: 32387898-32389897 Medicago truncatula
Medtr6g086270 2.0kb downstream 2.0kb downstream 10942 true chr6: 32376956-32387897 Medicago truncatula
Medtr6g086270 2.0kb downstream 2.0kb downstream 2000 false chr6: 32376956-32378955 Medicago truncatula
Medtr6g086270 5.0kb upstream 5.0kb upstream 13942 true chr6: 32378956-32392897 Medicago truncatula
Medtr6g086270 5.0kb upstream 5.0kb upstream 5000 false chr6: 32387898-32392897 Medicago truncatula
Medtr6g086270 5.0kb downstream 5.0kb downstream 13942 true chr6: 32373956-32387897 Medicago truncatula
Medtr6g086270 5.0kb downstream 5.0kb downstream 5000 false chr6: 32373956-32378955 Medicago truncatula
Medtr6g086270 10.0kb upstream 10.0kb upstream 18942 true chr6: 32378956-32397897 Medicago truncatula
Medtr6g086270 10.0kb upstream 10.0kb upstream 10000 false chr6: 32387898-32397897 Medicago truncatula
Medtr6g086270 10.0kb downstream 10.0kb downstream 18942 true chr6: 32368956-32387897 Medicago truncatula
Medtr6g086270 10.0kb downstream 10.0kb downstream 10000 false chr6: 32368956-32378955 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122046363 5273 Angiosperm View MSA
122304312 5265 Fabidae View MSA
124065685 5270 Rosid View MSA
123748625 5271 Pentapetalae View MSA
122788803 5272 Eudicot View MSA
121344642 5274 Embryophyte View MSA
123426480 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.095        
cufflinks 0.219        
cufflinks 0.289        
cufflinks 0.032     Low  
cufflinks 0.106        
cufflinks 0.007     Low Low
cufflinks 0.083        
cufflinks 0.38       High
cufflinks 0.264        

0 Strain