Gene : Medtr6g088505 M. truncatula Mt4.0v1
Defline:  (1 of 7) PTHR33265:SF8 - F5F19.20 PROTEIN Description:  Avr9/Cf-9 rapidly elicited protein
Genomic Order:  3679 Name:  ? Medtr6g088505
Secondary Identifier:  ? PAC:31102481
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g088505 0.5kb upstream 0.5kb upstream 1658 true chr6: 33663152-33664809 Medicago truncatula
Medtr6g088505 0.5kb upstream 0.5kb upstream 500 false chr6: 33664310-33664809 Medicago truncatula
Medtr6g088505 0.5kb downstream 0.5kb downstream 1658 true chr6: 33662652-33664309 Medicago truncatula
Medtr6g088505 0.5kb downstream 0.5kb downstream 500 false chr6: 33662652-33663151 Medicago truncatula
Medtr6g088505 1.0kb upstream 1.0kb upstream 2158 true chr6: 33663152-33665309 Medicago truncatula
Medtr6g088505 1.0kb upstream 1.0kb upstream 1000 false chr6: 33664310-33665309 Medicago truncatula
Medtr6g088505 1.0kb downstream 1.0kb downstream 2158 true chr6: 33662152-33664309 Medicago truncatula
Medtr6g088505 1.0kb downstream 1.0kb downstream 1000 false chr6: 33662152-33663151 Medicago truncatula
Medtr6g088505 2.0kb upstream 2.0kb upstream 3158 true chr6: 33663152-33666309 Medicago truncatula
Medtr6g088505 2.0kb upstream 2.0kb upstream 2000 false chr6: 33664310-33666309 Medicago truncatula
Medtr6g088505 2.0kb downstream 2.0kb downstream 3158 true chr6: 33661152-33664309 Medicago truncatula
Medtr6g088505 2.0kb downstream 2.0kb downstream 2000 false chr6: 33661152-33663151 Medicago truncatula
Medtr6g088505 5.0kb upstream 5.0kb upstream 6158 true chr6: 33663152-33669309 Medicago truncatula
Medtr6g088505 5.0kb upstream 5.0kb upstream 5000 false chr6: 33664310-33669309 Medicago truncatula
Medtr6g088505 5.0kb downstream 5.0kb downstream 6158 true chr6: 33658152-33664309 Medicago truncatula
Medtr6g088505 5.0kb downstream 5.0kb downstream 5000 false chr6: 33658152-33663151 Medicago truncatula
Medtr6g088505 10.0kb upstream 10.0kb upstream 11158 true chr6: 33663152-33674309 Medicago truncatula
Medtr6g088505 10.0kb upstream 10.0kb upstream 10000 false chr6: 33664310-33674309 Medicago truncatula
Medtr6g088505 10.0kb downstream 10.0kb downstream 11158 true chr6: 33653152-33664309 Medicago truncatula
Medtr6g088505 10.0kb downstream 10.0kb downstream 10000 false chr6: 33653152-33663151 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313783 5265 Fabidae View MSA
124070746 5270 Rosid View MSA
123749628 5271 Pentapetalae View MSA
122795982 5272 Eudicot View MSA
122049050 5273 Angiosperm View MSA
121311224 5274 Embryophyte View MSA
123348548 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.096       Low
cufflinks 0.643        
cufflinks 0.354        
cufflinks 1.208       High
cufflinks 0.745        
cufflinks 1.436       High
cufflinks 0.627        
cufflinks 0.217       Low
cufflinks 0.609        

0 Strain