Gene : Medtr6g088470 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR24193:SF70 - AAA-TYPE ATPASE FAMILY PROTEIN / ANKYRIN REPEAT FAMILY PROTEIN Description:  AAA-type ATPase family protein/ankyrin repeat protein
Genomic Order:  3570 Name:  ? Medtr6g088470
Secondary Identifier:  ? PAC:31103389
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g088470 0.5kb upstream 0.5kb upstream 7071 true chr6: 32846275-32853345 Medicago truncatula
Medtr6g088470 0.5kb upstream 0.5kb upstream 500 false chr6: 32852846-32853345 Medicago truncatula
Medtr6g088470 0.5kb downstream 0.5kb downstream 7071 true chr6: 32845775-32852845 Medicago truncatula
Medtr6g088470 0.5kb downstream 0.5kb downstream 500 false chr6: 32845775-32846274 Medicago truncatula
Medtr6g088470 1.0kb upstream 1.0kb upstream 7571 true chr6: 32846275-32853845 Medicago truncatula
Medtr6g088470 1.0kb upstream 1.0kb upstream 1000 false chr6: 32852846-32853845 Medicago truncatula
Medtr6g088470 1.0kb downstream 1.0kb downstream 7571 true chr6: 32845275-32852845 Medicago truncatula
Medtr6g088470 1.0kb downstream 1.0kb downstream 1000 false chr6: 32845275-32846274 Medicago truncatula
Medtr6g088470 2.0kb upstream 2.0kb upstream 8571 true chr6: 32846275-32854845 Medicago truncatula
Medtr6g088470 2.0kb upstream 2.0kb upstream 2000 false chr6: 32852846-32854845 Medicago truncatula
Medtr6g088470 2.0kb downstream 2.0kb downstream 8571 true chr6: 32844275-32852845 Medicago truncatula
Medtr6g088470 2.0kb downstream 2.0kb downstream 2000 false chr6: 32844275-32846274 Medicago truncatula
Medtr6g088470 5.0kb upstream 5.0kb upstream 11571 true chr6: 32846275-32857845 Medicago truncatula
Medtr6g088470 5.0kb upstream 5.0kb upstream 5000 false chr6: 32852846-32857845 Medicago truncatula
Medtr6g088470 5.0kb downstream 5.0kb downstream 11571 true chr6: 32841275-32852845 Medicago truncatula
Medtr6g088470 5.0kb downstream 5.0kb downstream 5000 false chr6: 32841275-32846274 Medicago truncatula
Medtr6g088470 10.0kb upstream 10.0kb upstream 16571 true chr6: 32846275-32862845 Medicago truncatula
Medtr6g088470 10.0kb upstream 10.0kb upstream 10000 false chr6: 32852846-32862845 Medicago truncatula
Medtr6g088470 10.0kb downstream 10.0kb downstream 16571 true chr6: 32836275-32852845 Medicago truncatula
Medtr6g088470 10.0kb downstream 10.0kb downstream 10000 false chr6: 32836275-32846274 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303953 5265 Fabidae View MSA
124062987 5270 Rosid View MSA
123751028 5271 Pentapetalae View MSA
122789998 5272 Eudicot View MSA
122041961 5273 Angiosperm View MSA
121346474 5274 Embryophyte View MSA
123380390 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.22       High
cufflinks 2.268        
cufflinks 2.434        
cufflinks 2.306        
cufflinks 2.618        
cufflinks 3.502        
cufflinks 6.149       High
cufflinks 2.06       Low
cufflinks 4.919       High

0 Strain