Gene : Medtr6g088140 M. truncatula Mt4.0v1
Defline:  (1 of 5) 5.4.99.8 - Cycloartenol synthase / 2,3-epoxysqualene--cycloartenol cyclase Description:  cycloartenol synthase
Genomic Order:  3644 Name:  ? Medtr6g088140
Secondary Identifier:  ? PAC:31104457
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-2541 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g088140 0.5kb upstream 0.5kb upstream 7693 true chr6: 33336504-33344196 Medicago truncatula
Medtr6g088140 0.5kb upstream 0.5kb upstream 500 false chr6: 33336504-33337003 Medicago truncatula
Medtr6g088140 0.5kb downstream 0.5kb downstream 7693 true chr6: 33337004-33344696 Medicago truncatula
Medtr6g088140 0.5kb downstream 0.5kb downstream 500 false chr6: 33344197-33344696 Medicago truncatula
Medtr6g088140 1.0kb upstream 1.0kb upstream 8193 true chr6: 33336004-33344196 Medicago truncatula
Medtr6g088140 1.0kb upstream 1.0kb upstream 1000 false chr6: 33336004-33337003 Medicago truncatula
Medtr6g088140 1.0kb downstream 1.0kb downstream 8193 true chr6: 33337004-33345196 Medicago truncatula
Medtr6g088140 1.0kb downstream 1.0kb downstream 1000 false chr6: 33344197-33345196 Medicago truncatula
Medtr6g088140 2.0kb upstream 2.0kb upstream 9193 true chr6: 33335004-33344196 Medicago truncatula
Medtr6g088140 2.0kb upstream 2.0kb upstream 2000 false chr6: 33335004-33337003 Medicago truncatula
Medtr6g088140 2.0kb downstream 2.0kb downstream 9193 true chr6: 33337004-33346196 Medicago truncatula
Medtr6g088140 2.0kb downstream 2.0kb downstream 2000 false chr6: 33344197-33346196 Medicago truncatula
Medtr6g088140 5.0kb upstream 5.0kb upstream 12193 true chr6: 33332004-33344196 Medicago truncatula
Medtr6g088140 5.0kb upstream 5.0kb upstream 5000 false chr6: 33332004-33337003 Medicago truncatula
Medtr6g088140 5.0kb downstream 5.0kb downstream 12193 true chr6: 33337004-33349196 Medicago truncatula
Medtr6g088140 5.0kb downstream 5.0kb downstream 5000 false chr6: 33344197-33349196 Medicago truncatula
Medtr6g088140 10.0kb upstream 10.0kb upstream 17193 true chr6: 33327004-33344196 Medicago truncatula
Medtr6g088140 10.0kb upstream 10.0kb upstream 10000 false chr6: 33327004-33337003 Medicago truncatula
Medtr6g088140 10.0kb downstream 10.0kb downstream 17193 true chr6: 33337004-33354196 Medicago truncatula
Medtr6g088140 10.0kb downstream 10.0kb downstream 10000 false chr6: 33344197-33354196 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314535 5265 Fabidae View MSA
124061853 5270 Rosid View MSA
123750129 5271 Pentapetalae View MSA
122795524 5272 Eudicot View MSA
122043543 5273 Angiosperm View MSA
121345283 5274 Embryophyte View MSA
123424991 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.028     Low  

0 Strain