Gene : Medtr6g088020 M. truncatula Mt4.0v1
Defline:  (1 of 9) PTHR10535 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 Description:  DNA-directed RNA polymerase II
Genomic Order:  3611 Name:  ? Medtr6g088020
Secondary Identifier:  ? PAC:31102742
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g088020 0.5kb upstream 0.5kb upstream 3305 true chr6: 33139934-33143238 Medicago truncatula
Medtr6g088020 0.5kb upstream 0.5kb upstream 500 false chr6: 33139934-33140433 Medicago truncatula
Medtr6g088020 0.5kb downstream 0.5kb downstream 3305 true chr6: 33140434-33143738 Medicago truncatula
Medtr6g088020 0.5kb downstream 0.5kb downstream 500 false chr6: 33143239-33143738 Medicago truncatula
Medtr6g088020 1.0kb upstream 1.0kb upstream 3805 true chr6: 33139434-33143238 Medicago truncatula
Medtr6g088020 1.0kb upstream 1.0kb upstream 1000 false chr6: 33139434-33140433 Medicago truncatula
Medtr6g088020 1.0kb downstream 1.0kb downstream 3805 true chr6: 33140434-33144238 Medicago truncatula
Medtr6g088020 1.0kb downstream 1.0kb downstream 1000 false chr6: 33143239-33144238 Medicago truncatula
Medtr6g088020 2.0kb upstream 2.0kb upstream 4805 true chr6: 33138434-33143238 Medicago truncatula
Medtr6g088020 2.0kb upstream 2.0kb upstream 2000 false chr6: 33138434-33140433 Medicago truncatula
Medtr6g088020 2.0kb downstream 2.0kb downstream 4805 true chr6: 33140434-33145238 Medicago truncatula
Medtr6g088020 2.0kb downstream 2.0kb downstream 2000 false chr6: 33143239-33145238 Medicago truncatula
Medtr6g088020 5.0kb upstream 5.0kb upstream 7805 true chr6: 33135434-33143238 Medicago truncatula
Medtr6g088020 5.0kb upstream 5.0kb upstream 5000 false chr6: 33135434-33140433 Medicago truncatula
Medtr6g088020 5.0kb downstream 5.0kb downstream 7805 true chr6: 33140434-33148238 Medicago truncatula
Medtr6g088020 5.0kb downstream 5.0kb downstream 5000 false chr6: 33143239-33148238 Medicago truncatula
Medtr6g088020 10.0kb upstream 10.0kb upstream 12805 true chr6: 33130434-33143238 Medicago truncatula
Medtr6g088020 10.0kb upstream 10.0kb upstream 10000 false chr6: 33130434-33140433 Medicago truncatula
Medtr6g088020 10.0kb downstream 10.0kb downstream 12805 true chr6: 33140434-33153238 Medicago truncatula
Medtr6g088020 10.0kb downstream 10.0kb downstream 10000 false chr6: 33143239-33153238 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121783547 5273 Angiosperm View MSA
122295974 5265 Fabidae View MSA
124035411 5270 Rosid View MSA
123755184 5271 Pentapetalae View MSA
122776478 5272 Eudicot View MSA
121055000 5274 Embryophyte View MSA
123094950 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.54       High
cufflinks 0.232        
cufflinks 0.34        
cufflinks 0.162        
cufflinks 0.376        
cufflinks 0.152        
cufflinks 0.161        
cufflinks 0.318        
cufflinks 0.097       Low

0 Strain