Gene : Medtr6g089570 M. truncatula Mt4.0v1
Defline:  (1 of 2) 2.3.3.10 - Hydroxymethylglutaryl-CoA synthase / Hydroxymethylglutaryl coenzyme alpha-condensing enzyme Description:  3-hydroxy-3-methylglutaryl coenzyme A synthase
Genomic Order:  2560 Name:  ? Medtr6g089570
Secondary Identifier:  ? PAC:31104376
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5910 Medicago truncatula pathologic  
Mtruncatula PWY-922 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g089570 0.5kb upstream 0.5kb upstream 6934 true chr6: 22740317-22747250 Medicago truncatula
Medtr6g089570 0.5kb upstream 0.5kb upstream 500 false chr6: 22746751-22747250 Medicago truncatula
Medtr6g089570 0.5kb downstream 0.5kb downstream 6934 true chr6: 22739817-22746750 Medicago truncatula
Medtr6g089570 0.5kb downstream 0.5kb downstream 500 false chr6: 22739817-22740316 Medicago truncatula
Medtr6g089570 1.0kb upstream 1.0kb upstream 7434 true chr6: 22740317-22747750 Medicago truncatula
Medtr6g089570 1.0kb upstream 1.0kb upstream 1000 false chr6: 22746751-22747750 Medicago truncatula
Medtr6g089570 1.0kb downstream 1.0kb downstream 7434 true chr6: 22739317-22746750 Medicago truncatula
Medtr6g089570 1.0kb downstream 1.0kb downstream 1000 false chr6: 22739317-22740316 Medicago truncatula
Medtr6g089570 2.0kb upstream 2.0kb upstream 8434 true chr6: 22740317-22748750 Medicago truncatula
Medtr6g089570 2.0kb upstream 2.0kb upstream 2000 false chr6: 22746751-22748750 Medicago truncatula
Medtr6g089570 2.0kb downstream 2.0kb downstream 8434 true chr6: 22738317-22746750 Medicago truncatula
Medtr6g089570 2.0kb downstream 2.0kb downstream 2000 false chr6: 22738317-22740316 Medicago truncatula
Medtr6g089570 5.0kb upstream 5.0kb upstream 11434 true chr6: 22740317-22751750 Medicago truncatula
Medtr6g089570 5.0kb upstream 5.0kb upstream 5000 false chr6: 22746751-22751750 Medicago truncatula
Medtr6g089570 5.0kb downstream 5.0kb downstream 11434 true chr6: 22735317-22746750 Medicago truncatula
Medtr6g089570 5.0kb downstream 5.0kb downstream 5000 false chr6: 22735317-22740316 Medicago truncatula
Medtr6g089570 10.0kb upstream 10.0kb upstream 16434 true chr6: 22740317-22756750 Medicago truncatula
Medtr6g089570 10.0kb upstream 10.0kb upstream 10000 false chr6: 22746751-22756750 Medicago truncatula
Medtr6g089570 10.0kb downstream 10.0kb downstream 16434 true chr6: 22730317-22746750 Medicago truncatula
Medtr6g089570 10.0kb downstream 10.0kb downstream 10000 false chr6: 22730317-22740316 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297184 5265 Fabidae View MSA
124035937 5270 Rosid View MSA
123746885 5271 Pentapetalae View MSA
122791824 5272 Eudicot View MSA
122042701 5273 Angiosperm View MSA
121346246 5274 Embryophyte View MSA
123424795 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.094       Low
cufflinks 0.514        
cufflinks 0.581        
cufflinks 0.045     Low Low
cufflinks 1.173       High
cufflinks 0.137     Low  
cufflinks 0.221        
cufflinks 0.416        
cufflinks 0.457        

0 Strain