Gene : Medtr6g088865 M. truncatula Mt4.0v1
Defline:  (1 of 6) 6.1.1.19 - Arginine--tRNA ligase / Arginyl-tRNA synthetase Description:  cytoplasmic-like arginine-tRNA ligase
Genomic Order:  3722 Name:  ? Medtr6g088865
Secondary Identifier:  ? PAC:31104164
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g088865 0.5kb upstream 0.5kb upstream 10557 true chr6: 34024813-34035369 Medicago truncatula
Medtr6g088865 0.5kb upstream 0.5kb upstream 500 false chr6: 34024813-34025312 Medicago truncatula
Medtr6g088865 0.5kb downstream 0.5kb downstream 10557 true chr6: 34025313-34035869 Medicago truncatula
Medtr6g088865 0.5kb downstream 0.5kb downstream 500 false chr6: 34035370-34035869 Medicago truncatula
Medtr6g088865 1.0kb upstream 1.0kb upstream 11057 true chr6: 34024313-34035369 Medicago truncatula
Medtr6g088865 1.0kb upstream 1.0kb upstream 1000 false chr6: 34024313-34025312 Medicago truncatula
Medtr6g088865 1.0kb downstream 1.0kb downstream 11057 true chr6: 34025313-34036369 Medicago truncatula
Medtr6g088865 1.0kb downstream 1.0kb downstream 1000 false chr6: 34035370-34036369 Medicago truncatula
Medtr6g088865 2.0kb upstream 2.0kb upstream 12057 true chr6: 34023313-34035369 Medicago truncatula
Medtr6g088865 2.0kb upstream 2.0kb upstream 2000 false chr6: 34023313-34025312 Medicago truncatula
Medtr6g088865 2.0kb downstream 2.0kb downstream 12057 true chr6: 34025313-34037369 Medicago truncatula
Medtr6g088865 2.0kb downstream 2.0kb downstream 2000 false chr6: 34035370-34037369 Medicago truncatula
Medtr6g088865 5.0kb upstream 5.0kb upstream 15057 true chr6: 34020313-34035369 Medicago truncatula
Medtr6g088865 5.0kb upstream 5.0kb upstream 5000 false chr6: 34020313-34025312 Medicago truncatula
Medtr6g088865 5.0kb downstream 5.0kb downstream 15057 true chr6: 34025313-34040369 Medicago truncatula
Medtr6g088865 5.0kb downstream 5.0kb downstream 5000 false chr6: 34035370-34040369 Medicago truncatula
Medtr6g088865 10.0kb upstream 10.0kb upstream 20057 true chr6: 34015313-34035369 Medicago truncatula
Medtr6g088865 10.0kb upstream 10.0kb upstream 10000 false chr6: 34015313-34025312 Medicago truncatula
Medtr6g088865 10.0kb downstream 10.0kb downstream 20057 true chr6: 34025313-34045369 Medicago truncatula
Medtr6g088865 10.0kb downstream 10.0kb downstream 10000 false chr6: 34035370-34045369 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306333 5265 Fabidae View MSA
124068746 5270 Rosid View MSA
123739648 5271 Pentapetalae View MSA
122789806 5272 Eudicot View MSA
122042876 5273 Angiosperm View MSA
121345157 5274 Embryophyte View MSA
123426289 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.131        
cufflinks 10.208     High  
cufflinks 14.16     High High
cufflinks 0.595       Low
cufflinks 13.494     High High
cufflinks 0.746       Low
cufflinks 1.606        
cufflinks 12.616     High  
cufflinks 0.926        

0 Strain