Gene : Medtr6g088680 M. truncatula Mt4.0v1
Defline:  (1 of 5) PTHR21068:SF5 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MIL23-RELATED Description:  senescence/dehydration-associated-like protein
Genomic Order:  3693 Name:  ? Medtr6g088680
Secondary Identifier:  ? PAC:31105232
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g088680 0.5kb upstream 0.5kb upstream 3902 true chr6: 33815362-33819263 Medicago truncatula
Medtr6g088680 0.5kb upstream 0.5kb upstream 500 false chr6: 33818764-33819263 Medicago truncatula
Medtr6g088680 0.5kb downstream 0.5kb downstream 3902 true chr6: 33814862-33818763 Medicago truncatula
Medtr6g088680 0.5kb downstream 0.5kb downstream 500 false chr6: 33814862-33815361 Medicago truncatula
Medtr6g088680 1.0kb upstream 1.0kb upstream 4402 true chr6: 33815362-33819763 Medicago truncatula
Medtr6g088680 1.0kb upstream 1.0kb upstream 1000 false chr6: 33818764-33819763 Medicago truncatula
Medtr6g088680 1.0kb downstream 1.0kb downstream 4402 true chr6: 33814362-33818763 Medicago truncatula
Medtr6g088680 1.0kb downstream 1.0kb downstream 1000 false chr6: 33814362-33815361 Medicago truncatula
Medtr6g088680 2.0kb upstream 2.0kb upstream 5402 true chr6: 33815362-33820763 Medicago truncatula
Medtr6g088680 2.0kb upstream 2.0kb upstream 2000 false chr6: 33818764-33820763 Medicago truncatula
Medtr6g088680 2.0kb downstream 2.0kb downstream 5402 true chr6: 33813362-33818763 Medicago truncatula
Medtr6g088680 2.0kb downstream 2.0kb downstream 2000 false chr6: 33813362-33815361 Medicago truncatula
Medtr6g088680 5.0kb upstream 5.0kb upstream 8402 true chr6: 33815362-33823763 Medicago truncatula
Medtr6g088680 5.0kb upstream 5.0kb upstream 5000 false chr6: 33818764-33823763 Medicago truncatula
Medtr6g088680 5.0kb downstream 5.0kb downstream 8402 true chr6: 33810362-33818763 Medicago truncatula
Medtr6g088680 5.0kb downstream 5.0kb downstream 5000 false chr6: 33810362-33815361 Medicago truncatula
Medtr6g088680 10.0kb upstream 10.0kb upstream 13402 true chr6: 33815362-33828763 Medicago truncatula
Medtr6g088680 10.0kb upstream 10.0kb upstream 10000 false chr6: 33818764-33828763 Medicago truncatula
Medtr6g088680 10.0kb downstream 10.0kb downstream 13402 true chr6: 33805362-33818763 Medicago truncatula
Medtr6g088680 10.0kb downstream 10.0kb downstream 10000 false chr6: 33805362-33815361 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026413 5273 Angiosperm View MSA
122296763 5265 Fabidae View MSA
124035773 5270 Rosid View MSA
123740247 5271 Pentapetalae View MSA
122787553 5272 Eudicot View MSA
121296318 5274 Embryophyte View MSA
123334500 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.198       Low
cufflinks 1.653        
cufflinks 2.018        
cufflinks 0.433        
cufflinks 2.592       High
cufflinks 0.565        
cufflinks 1.136        
cufflinks 2.026        
cufflinks 0.847        

0 Strain