Gene : Medtr6g071320 M. truncatula Mt4.0v1
Defline:  (1 of 47) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Description:  PPR containing plant-like protein
Genomic Order:  2873 Name:  ? Medtr6g071320
Secondary Identifier:  ? PAC:31102405
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g071320 0.5kb upstream 0.5kb upstream 2009 true chr6: 26366732-26368740 Medicago truncatula
Medtr6g071320 0.5kb upstream 0.5kb upstream 500 false chr6: 26368241-26368740 Medicago truncatula
Medtr6g071320 0.5kb downstream 0.5kb downstream 2009 true chr6: 26366232-26368240 Medicago truncatula
Medtr6g071320 0.5kb downstream 0.5kb downstream 500 false chr6: 26366232-26366731 Medicago truncatula
Medtr6g071320 1.0kb upstream 1.0kb upstream 2509 true chr6: 26366732-26369240 Medicago truncatula
Medtr6g071320 1.0kb upstream 1.0kb upstream 1000 false chr6: 26368241-26369240 Medicago truncatula
Medtr6g071320 1.0kb downstream 1.0kb downstream 2509 true chr6: 26365732-26368240 Medicago truncatula
Medtr6g071320 1.0kb downstream 1.0kb downstream 1000 false chr6: 26365732-26366731 Medicago truncatula
Medtr6g071320 2.0kb upstream 2.0kb upstream 3509 true chr6: 26366732-26370240 Medicago truncatula
Medtr6g071320 2.0kb upstream 2.0kb upstream 2000 false chr6: 26368241-26370240 Medicago truncatula
Medtr6g071320 2.0kb downstream 2.0kb downstream 3509 true chr6: 26364732-26368240 Medicago truncatula
Medtr6g071320 2.0kb downstream 2.0kb downstream 2000 false chr6: 26364732-26366731 Medicago truncatula
Medtr6g071320 5.0kb upstream 5.0kb upstream 6509 true chr6: 26366732-26373240 Medicago truncatula
Medtr6g071320 5.0kb upstream 5.0kb upstream 5000 false chr6: 26368241-26373240 Medicago truncatula
Medtr6g071320 5.0kb downstream 5.0kb downstream 6509 true chr6: 26361732-26368240 Medicago truncatula
Medtr6g071320 5.0kb downstream 5.0kb downstream 5000 false chr6: 26361732-26366731 Medicago truncatula
Medtr6g071320 10.0kb upstream 10.0kb upstream 11509 true chr6: 26366732-26378240 Medicago truncatula
Medtr6g071320 10.0kb upstream 10.0kb upstream 10000 false chr6: 26368241-26378240 Medicago truncatula
Medtr6g071320 10.0kb downstream 10.0kb downstream 11509 true chr6: 26356732-26368240 Medicago truncatula
Medtr6g071320 10.0kb downstream 10.0kb downstream 10000 false chr6: 26356732-26366731 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305220 5265 Fabidae View MSA
124065853 5270 Rosid View MSA
123740694 5271 Pentapetalae View MSA
122786557 5272 Eudicot View MSA
122042535 5273 Angiosperm View MSA
121309984 5274 Embryophyte View MSA
123347596 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.816       High
cufflinks 3.3        
cufflinks 4.916        
cufflinks 0.944       Low
cufflinks 4.331        
cufflinks 1.499        
cufflinks 2.327        
cufflinks 3.715        
cufflinks 1.466        

0 Strain