Gene : Medtr6g077740 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR20932//PTHR20932:SF11 - LOC443603 PROTEIN-RELATED Description:  peptidoglycan-binding LysM domain protein, putative
Genomic Order:  3133 Name:  ? Medtr6g077740
Secondary Identifier:  ? PAC:31102780
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g077740 0.5kb upstream 0.5kb upstream 4195 true chr6: 29185528-29189722 Medicago truncatula
Medtr6g077740 0.5kb upstream 0.5kb upstream 500 false chr6: 29185528-29186027 Medicago truncatula
Medtr6g077740 0.5kb downstream 0.5kb downstream 4195 true chr6: 29186028-29190222 Medicago truncatula
Medtr6g077740 0.5kb downstream 0.5kb downstream 500 false chr6: 29189723-29190222 Medicago truncatula
Medtr6g077740 1.0kb upstream 1.0kb upstream 4695 true chr6: 29185028-29189722 Medicago truncatula
Medtr6g077740 1.0kb upstream 1.0kb upstream 1000 false chr6: 29185028-29186027 Medicago truncatula
Medtr6g077740 1.0kb downstream 1.0kb downstream 4695 true chr6: 29186028-29190722 Medicago truncatula
Medtr6g077740 1.0kb downstream 1.0kb downstream 1000 false chr6: 29189723-29190722 Medicago truncatula
Medtr6g077740 2.0kb upstream 2.0kb upstream 5695 true chr6: 29184028-29189722 Medicago truncatula
Medtr6g077740 2.0kb upstream 2.0kb upstream 2000 false chr6: 29184028-29186027 Medicago truncatula
Medtr6g077740 2.0kb downstream 2.0kb downstream 5695 true chr6: 29186028-29191722 Medicago truncatula
Medtr6g077740 2.0kb downstream 2.0kb downstream 2000 false chr6: 29189723-29191722 Medicago truncatula
Medtr6g077740 5.0kb upstream 5.0kb upstream 8695 true chr6: 29181028-29189722 Medicago truncatula
Medtr6g077740 5.0kb upstream 5.0kb upstream 5000 false chr6: 29181028-29186027 Medicago truncatula
Medtr6g077740 5.0kb downstream 5.0kb downstream 8695 true chr6: 29186028-29194722 Medicago truncatula
Medtr6g077740 5.0kb downstream 5.0kb downstream 5000 false chr6: 29189723-29194722 Medicago truncatula
Medtr6g077740 10.0kb upstream 10.0kb upstream 13695 true chr6: 29176028-29189722 Medicago truncatula
Medtr6g077740 10.0kb upstream 10.0kb upstream 10000 false chr6: 29176028-29186027 Medicago truncatula
Medtr6g077740 10.0kb downstream 10.0kb downstream 13695 true chr6: 29186028-29199722 Medicago truncatula
Medtr6g077740 10.0kb downstream 10.0kb downstream 10000 false chr6: 29189723-29199722 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040928 5273 Angiosperm View MSA
122308441 5265 Fabidae View MSA
124070010 5270 Rosid View MSA
123744886 5271 Pentapetalae View MSA
122793061 5272 Eudicot View MSA
121350889 5274 Embryophyte View MSA
123426344 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.416       High
cufflinks 5.578        
cufflinks 5.501        
cufflinks 1.77       Low
cufflinks 5.915        
cufflinks 1.625       Low
cufflinks 4.281        
cufflinks 3.878        
cufflinks 5.187        

0 Strain