Gene : Medtr6g079660 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR22763:SF5 - E3 UBIQUITIN-PROTEIN LIGASE CIP8 Description:  zinc finger, C3HC4 type (RING finger) protein
Genomic Order:  3132 Name:  ? Medtr6g079660
Secondary Identifier:  ? PAC:31102548
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g079660 0.5kb upstream 0.5kb upstream 8335 true chr6: 29163521-29171855 Medicago truncatula
Medtr6g079660 0.5kb upstream 0.5kb upstream 500 false chr6: 29163521-29164020 Medicago truncatula
Medtr6g079660 0.5kb downstream 0.5kb downstream 8335 true chr6: 29164021-29172355 Medicago truncatula
Medtr6g079660 0.5kb downstream 0.5kb downstream 500 false chr6: 29171856-29172355 Medicago truncatula
Medtr6g079660 1.0kb upstream 1.0kb upstream 8835 true chr6: 29163021-29171855 Medicago truncatula
Medtr6g079660 1.0kb upstream 1.0kb upstream 1000 false chr6: 29163021-29164020 Medicago truncatula
Medtr6g079660 1.0kb downstream 1.0kb downstream 8835 true chr6: 29164021-29172855 Medicago truncatula
Medtr6g079660 1.0kb downstream 1.0kb downstream 1000 false chr6: 29171856-29172855 Medicago truncatula
Medtr6g079660 2.0kb upstream 2.0kb upstream 9835 true chr6: 29162021-29171855 Medicago truncatula
Medtr6g079660 2.0kb upstream 2.0kb upstream 2000 false chr6: 29162021-29164020 Medicago truncatula
Medtr6g079660 2.0kb downstream 2.0kb downstream 9835 true chr6: 29164021-29173855 Medicago truncatula
Medtr6g079660 2.0kb downstream 2.0kb downstream 2000 false chr6: 29171856-29173855 Medicago truncatula
Medtr6g079660 5.0kb upstream 5.0kb upstream 12835 true chr6: 29159021-29171855 Medicago truncatula
Medtr6g079660 5.0kb upstream 5.0kb upstream 5000 false chr6: 29159021-29164020 Medicago truncatula
Medtr6g079660 5.0kb downstream 5.0kb downstream 12835 true chr6: 29164021-29176855 Medicago truncatula
Medtr6g079660 5.0kb downstream 5.0kb downstream 5000 false chr6: 29171856-29176855 Medicago truncatula
Medtr6g079660 10.0kb upstream 10.0kb upstream 17835 true chr6: 29154021-29171855 Medicago truncatula
Medtr6g079660 10.0kb upstream 10.0kb upstream 10000 false chr6: 29154021-29164020 Medicago truncatula
Medtr6g079660 10.0kb downstream 10.0kb downstream 17835 true chr6: 29164021-29181855 Medicago truncatula
Medtr6g079660 10.0kb downstream 10.0kb downstream 10000 false chr6: 29171856-29181855 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299997 5265 Fabidae View MSA
124062824 5270 Rosid View MSA
123753393 5271 Pentapetalae View MSA
122788391 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.757        
cufflinks 1.86        
cufflinks 1.822        
cufflinks 5.403       High
cufflinks 1.817        
cufflinks 2.978        
cufflinks 2.472        
cufflinks 1.693        
cufflinks 3.16        

0 Strain