Gene : Medtr6g048440 M. truncatula Mt4.0v1
Defline:  (1 of 2) 1.14.13.129 - Beta-carotene 3-hydroxylase / Beta-carotene 3,3'-monooxygenase Description:  beta-carotene hydroxylase
Genomic Order:  2086 Name:  ? Medtr6g048440
Secondary Identifier:  ? PAC:31101650
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula CAROTENOID-PWY Medicago truncatula pathologic  
Mtruncatula PWY-5944 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g048440 0.5kb upstream 0.5kb upstream 5745 true chr6: 17494177-17499921 Medicago truncatula
Medtr6g048440 0.5kb upstream 0.5kb upstream 500 false chr6: 17499422-17499921 Medicago truncatula
Medtr6g048440 0.5kb downstream 0.5kb downstream 5745 true chr6: 17493677-17499421 Medicago truncatula
Medtr6g048440 0.5kb downstream 0.5kb downstream 500 false chr6: 17493677-17494176 Medicago truncatula
Medtr6g048440 1.0kb upstream 1.0kb upstream 6245 true chr6: 17494177-17500421 Medicago truncatula
Medtr6g048440 1.0kb upstream 1.0kb upstream 1000 false chr6: 17499422-17500421 Medicago truncatula
Medtr6g048440 1.0kb downstream 1.0kb downstream 6245 true chr6: 17493177-17499421 Medicago truncatula
Medtr6g048440 1.0kb downstream 1.0kb downstream 1000 false chr6: 17493177-17494176 Medicago truncatula
Medtr6g048440 2.0kb upstream 2.0kb upstream 7245 true chr6: 17494177-17501421 Medicago truncatula
Medtr6g048440 2.0kb upstream 2.0kb upstream 2000 false chr6: 17499422-17501421 Medicago truncatula
Medtr6g048440 2.0kb downstream 2.0kb downstream 7245 true chr6: 17492177-17499421 Medicago truncatula
Medtr6g048440 2.0kb downstream 2.0kb downstream 2000 false chr6: 17492177-17494176 Medicago truncatula
Medtr6g048440 5.0kb upstream 5.0kb upstream 10245 true chr6: 17494177-17504421 Medicago truncatula
Medtr6g048440 5.0kb upstream 5.0kb upstream 5000 false chr6: 17499422-17504421 Medicago truncatula
Medtr6g048440 5.0kb downstream 5.0kb downstream 10245 true chr6: 17489177-17499421 Medicago truncatula
Medtr6g048440 5.0kb downstream 5.0kb downstream 5000 false chr6: 17489177-17494176 Medicago truncatula
Medtr6g048440 10.0kb upstream 10.0kb upstream 15245 true chr6: 17494177-17509421 Medicago truncatula
Medtr6g048440 10.0kb upstream 10.0kb upstream 10000 false chr6: 17499422-17509421 Medicago truncatula
Medtr6g048440 10.0kb downstream 10.0kb downstream 15245 true chr6: 17484177-17499421 Medicago truncatula
Medtr6g048440 10.0kb downstream 10.0kb downstream 10000 false chr6: 17484177-17494176 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310788 5265 Fabidae View MSA
124066838 5270 Rosid View MSA
123749049 5271 Pentapetalae View MSA
122787521 5272 Eudicot View MSA
122046641 5273 Angiosperm View MSA
123429104 5275 Viridiplantae View MSA
121351007 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.974     High High
cufflinks 2.764        
cufflinks 0.824       Low
cufflinks 1.967        
cufflinks 1.494        
cufflinks 0.767       Low
cufflinks 3.153        
cufflinks 0.994        
cufflinks 1.721        

0 Strain