Gene : Medtr6g047800 M. truncatula Mt4.0v1
Defline:  (1 of 4) 2.1.1.220 - tRNA (adenine(58)-N(1))-methyltransferase / tRNA m(1)A(58) methyltransferase Description:  tRNA methyltransferase complex GCD14 subunit
Genomic Order:  2053 Name:  ? Medtr6g047800
Secondary Identifier:  ? PAC:31102431
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6829 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g047800 0.5kb upstream 0.5kb upstream 4353 true chr6: 17240055-17244407 Medicago truncatula
Medtr6g047800 0.5kb upstream 0.5kb upstream 500 false chr6: 17240055-17240554 Medicago truncatula
Medtr6g047800 0.5kb downstream 0.5kb downstream 4353 true chr6: 17240555-17244907 Medicago truncatula
Medtr6g047800 0.5kb downstream 0.5kb downstream 500 false chr6: 17244408-17244907 Medicago truncatula
Medtr6g047800 1.0kb upstream 1.0kb upstream 4853 true chr6: 17239555-17244407 Medicago truncatula
Medtr6g047800 1.0kb upstream 1.0kb upstream 1000 false chr6: 17239555-17240554 Medicago truncatula
Medtr6g047800 1.0kb downstream 1.0kb downstream 4853 true chr6: 17240555-17245407 Medicago truncatula
Medtr6g047800 1.0kb downstream 1.0kb downstream 1000 false chr6: 17244408-17245407 Medicago truncatula
Medtr6g047800 2.0kb upstream 2.0kb upstream 5853 true chr6: 17238555-17244407 Medicago truncatula
Medtr6g047800 2.0kb upstream 2.0kb upstream 2000 false chr6: 17238555-17240554 Medicago truncatula
Medtr6g047800 2.0kb downstream 2.0kb downstream 5853 true chr6: 17240555-17246407 Medicago truncatula
Medtr6g047800 2.0kb downstream 2.0kb downstream 2000 false chr6: 17244408-17246407 Medicago truncatula
Medtr6g047800 5.0kb upstream 5.0kb upstream 8853 true chr6: 17235555-17244407 Medicago truncatula
Medtr6g047800 5.0kb upstream 5.0kb upstream 5000 false chr6: 17235555-17240554 Medicago truncatula
Medtr6g047800 5.0kb downstream 5.0kb downstream 8853 true chr6: 17240555-17249407 Medicago truncatula
Medtr6g047800 5.0kb downstream 5.0kb downstream 5000 false chr6: 17244408-17249407 Medicago truncatula
Medtr6g047800 10.0kb upstream 10.0kb upstream 13853 true chr6: 17230555-17244407 Medicago truncatula
Medtr6g047800 10.0kb upstream 10.0kb upstream 10000 false chr6: 17230555-17240554 Medicago truncatula
Medtr6g047800 10.0kb downstream 10.0kb downstream 13853 true chr6: 17240555-17254407 Medicago truncatula
Medtr6g047800 10.0kb downstream 10.0kb downstream 10000 false chr6: 17244408-17254407 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307322 5265 Fabidae View MSA
124067339 5270 Rosid View MSA
123740177 5271 Pentapetalae View MSA
122793445 5272 Eudicot View MSA
122045272 5273 Angiosperm View MSA
121345508 5274 Embryophyte View MSA
123423922 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.451        
cufflinks 2.091        
cufflinks 1.993        
cufflinks 1.661        
cufflinks 2.877       High
cufflinks 0.738       Low
cufflinks 2.477        
cufflinks 1.819        
cufflinks 2.221        

0 Strain