Gene : Medtr6g053720 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR10869:SF55 - OXOGLUTARATE/IRON-DEPENDENT OXYGENASE Description:  prolyl 4-hydroxylase alpha subunit, putative
Genomic Order:  2268 Name:  ? Medtr6g053720
Secondary Identifier:  ? PAC:31101872
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g053720 0.5kb upstream 0.5kb upstream 5682 true chr6: 19368395-19374076 Medicago truncatula
Medtr6g053720 0.5kb upstream 0.5kb upstream 500 false chr6: 19368395-19368894 Medicago truncatula
Medtr6g053720 0.5kb downstream 0.5kb downstream 5682 true chr6: 19368895-19374576 Medicago truncatula
Medtr6g053720 0.5kb downstream 0.5kb downstream 500 false chr6: 19374077-19374576 Medicago truncatula
Medtr6g053720 1.0kb upstream 1.0kb upstream 6182 true chr6: 19367895-19374076 Medicago truncatula
Medtr6g053720 1.0kb upstream 1.0kb upstream 1000 false chr6: 19367895-19368894 Medicago truncatula
Medtr6g053720 1.0kb downstream 1.0kb downstream 6182 true chr6: 19368895-19375076 Medicago truncatula
Medtr6g053720 1.0kb downstream 1.0kb downstream 1000 false chr6: 19374077-19375076 Medicago truncatula
Medtr6g053720 2.0kb upstream 2.0kb upstream 7182 true chr6: 19366895-19374076 Medicago truncatula
Medtr6g053720 2.0kb upstream 2.0kb upstream 2000 false chr6: 19366895-19368894 Medicago truncatula
Medtr6g053720 2.0kb downstream 2.0kb downstream 7182 true chr6: 19368895-19376076 Medicago truncatula
Medtr6g053720 2.0kb downstream 2.0kb downstream 2000 false chr6: 19374077-19376076 Medicago truncatula
Medtr6g053720 5.0kb upstream 5.0kb upstream 10182 true chr6: 19363895-19374076 Medicago truncatula
Medtr6g053720 5.0kb upstream 5.0kb upstream 5000 false chr6: 19363895-19368894 Medicago truncatula
Medtr6g053720 5.0kb downstream 5.0kb downstream 10182 true chr6: 19368895-19379076 Medicago truncatula
Medtr6g053720 5.0kb downstream 5.0kb downstream 5000 false chr6: 19374077-19379076 Medicago truncatula
Medtr6g053720 10.0kb upstream 10.0kb upstream 15182 true chr6: 19358895-19374076 Medicago truncatula
Medtr6g053720 10.0kb upstream 10.0kb upstream 10000 false chr6: 19358895-19368894 Medicago truncatula
Medtr6g053720 10.0kb downstream 10.0kb downstream 15182 true chr6: 19368895-19384076 Medicago truncatula
Medtr6g053720 10.0kb downstream 10.0kb downstream 10000 false chr6: 19374077-19384076 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791816 5273 Angiosperm View MSA
122300160 5265 Fabidae View MSA
124066883 5270 Rosid View MSA
123739634 5271 Pentapetalae View MSA
122794132 5272 Eudicot View MSA
121063105 5274 Embryophyte View MSA
123102888 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.476        
cufflinks 0.692       High
cufflinks 0.521        
cufflinks 0.34        
cufflinks 0.697       High
cufflinks 0.196       Low
cufflinks 0.451        
cufflinks 0.493        
cufflinks 0.521        

0 Strain