Gene : Medtr6g059320 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR13069:SF11 - ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 6 Description:  2OG-Fe(II) oxygenase family protein
Genomic Order:  2350 Name:  ? Medtr6g059320
Secondary Identifier:  ? PAC:31105137
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6829 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g059320 0.5kb upstream 0.5kb upstream 5692 true chr6: 20363863-20369554 Medicago truncatula
Medtr6g059320 0.5kb upstream 0.5kb upstream 500 false chr6: 20369055-20369554 Medicago truncatula
Medtr6g059320 0.5kb downstream 0.5kb downstream 5692 true chr6: 20363363-20369054 Medicago truncatula
Medtr6g059320 0.5kb downstream 0.5kb downstream 500 false chr6: 20363363-20363862 Medicago truncatula
Medtr6g059320 1.0kb upstream 1.0kb upstream 6192 true chr6: 20363863-20370054 Medicago truncatula
Medtr6g059320 1.0kb upstream 1.0kb upstream 1000 false chr6: 20369055-20370054 Medicago truncatula
Medtr6g059320 1.0kb downstream 1.0kb downstream 6192 true chr6: 20362863-20369054 Medicago truncatula
Medtr6g059320 1.0kb downstream 1.0kb downstream 1000 false chr6: 20362863-20363862 Medicago truncatula
Medtr6g059320 2.0kb upstream 2.0kb upstream 7192 true chr6: 20363863-20371054 Medicago truncatula
Medtr6g059320 2.0kb upstream 2.0kb upstream 2000 false chr6: 20369055-20371054 Medicago truncatula
Medtr6g059320 2.0kb downstream 2.0kb downstream 7192 true chr6: 20361863-20369054 Medicago truncatula
Medtr6g059320 2.0kb downstream 2.0kb downstream 2000 false chr6: 20361863-20363862 Medicago truncatula
Medtr6g059320 5.0kb upstream 5.0kb upstream 10192 true chr6: 20363863-20374054 Medicago truncatula
Medtr6g059320 5.0kb upstream 5.0kb upstream 5000 false chr6: 20369055-20374054 Medicago truncatula
Medtr6g059320 5.0kb downstream 5.0kb downstream 10192 true chr6: 20358863-20369054 Medicago truncatula
Medtr6g059320 5.0kb downstream 5.0kb downstream 5000 false chr6: 20358863-20363862 Medicago truncatula
Medtr6g059320 10.0kb upstream 10.0kb upstream 15192 true chr6: 20363863-20379054 Medicago truncatula
Medtr6g059320 10.0kb upstream 10.0kb upstream 10000 false chr6: 20369055-20379054 Medicago truncatula
Medtr6g059320 10.0kb downstream 10.0kb downstream 15192 true chr6: 20353863-20369054 Medicago truncatula
Medtr6g059320 10.0kb downstream 10.0kb downstream 10000 false chr6: 20353863-20363862 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299166 5265 Fabidae View MSA
124065403 5270 Rosid View MSA
123740890 5271 Pentapetalae View MSA
122791933 5272 Eudicot View MSA
122044180 5273 Angiosperm View MSA
121345583 5274 Embryophyte View MSA
123428839 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.854       High
cufflinks 0.621        
cufflinks 0.673        
cufflinks 0.222       Low
cufflinks 0.783        
cufflinks 0.431        
cufflinks 0.386        
cufflinks 0.615        
cufflinks 0.376        

0 Strain