Gene : Medtr6g064960 M. truncatula Mt4.0v1
Defline:  (1 of 3) PF02900 - Catalytic LigB subunit of aromatic ring-opening dioxygenase (LigB) Description:  4,5-DOPA dioxygenase extradiol-like protein
Genomic Order:  2656 Name:  ? Medtr6g064960
Secondary Identifier:  ? PAC:31102856
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g064960 0.5kb upstream 0.5kb upstream 4279 true chr6: 24058028-24062306 Medicago truncatula
Medtr6g064960 0.5kb upstream 0.5kb upstream 500 false chr6: 24061807-24062306 Medicago truncatula
Medtr6g064960 0.5kb downstream 0.5kb downstream 4279 true chr6: 24057528-24061806 Medicago truncatula
Medtr6g064960 0.5kb downstream 0.5kb downstream 500 false chr6: 24057528-24058027 Medicago truncatula
Medtr6g064960 1.0kb upstream 1.0kb upstream 4779 true chr6: 24058028-24062806 Medicago truncatula
Medtr6g064960 1.0kb upstream 1.0kb upstream 1000 false chr6: 24061807-24062806 Medicago truncatula
Medtr6g064960 1.0kb downstream 1.0kb downstream 4779 true chr6: 24057028-24061806 Medicago truncatula
Medtr6g064960 1.0kb downstream 1.0kb downstream 1000 false chr6: 24057028-24058027 Medicago truncatula
Medtr6g064960 2.0kb upstream 2.0kb upstream 5779 true chr6: 24058028-24063806 Medicago truncatula
Medtr6g064960 2.0kb upstream 2.0kb upstream 2000 false chr6: 24061807-24063806 Medicago truncatula
Medtr6g064960 2.0kb downstream 2.0kb downstream 5779 true chr6: 24056028-24061806 Medicago truncatula
Medtr6g064960 2.0kb downstream 2.0kb downstream 2000 false chr6: 24056028-24058027 Medicago truncatula
Medtr6g064960 5.0kb upstream 5.0kb upstream 8779 true chr6: 24058028-24066806 Medicago truncatula
Medtr6g064960 5.0kb upstream 5.0kb upstream 5000 false chr6: 24061807-24066806 Medicago truncatula
Medtr6g064960 5.0kb downstream 5.0kb downstream 8779 true chr6: 24053028-24061806 Medicago truncatula
Medtr6g064960 5.0kb downstream 5.0kb downstream 5000 false chr6: 24053028-24058027 Medicago truncatula
Medtr6g064960 10.0kb upstream 10.0kb upstream 13779 true chr6: 24058028-24071806 Medicago truncatula
Medtr6g064960 10.0kb upstream 10.0kb upstream 10000 false chr6: 24061807-24071806 Medicago truncatula
Medtr6g064960 10.0kb downstream 10.0kb downstream 13779 true chr6: 24048028-24061806 Medicago truncatula
Medtr6g064960 10.0kb downstream 10.0kb downstream 10000 false chr6: 24048028-24058027 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307449 5265 Fabidae View MSA
124061164 5270 Rosid View MSA
123748112 5271 Pentapetalae View MSA
122788148 5272 Eudicot View MSA
122046323 5273 Angiosperm View MSA
121350065 5274 Embryophyte View MSA
123426386 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.186       Low
cufflinks 11.863     High  
cufflinks 6.115        
cufflinks 9.907     High  
cufflinks 11.096     High  
cufflinks 5.245        
cufflinks 9.482        
cufflinks 9.409     High  
cufflinks 6.114        

0 Strain