Gene : Medtr6g039820 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR22603:SF39 - CHOLINE KINASE 1-RELATED Description:  choline/ethanolamine kinase
Genomic Order:  1778 Name:  ? Medtr6g039820
Secondary Identifier:  ? PAC:31101601
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-3385 Medicago truncatula pathologic  
Mtruncatula PWY4FS-6 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g039820 0.5kb upstream 0.5kb upstream 5604 true chr6: 14330615-14336218 Medicago truncatula
Medtr6g039820 0.5kb upstream 0.5kb upstream 500 false chr6: 14335719-14336218 Medicago truncatula
Medtr6g039820 0.5kb downstream 0.5kb downstream 5604 true chr6: 14330115-14335718 Medicago truncatula
Medtr6g039820 0.5kb downstream 0.5kb downstream 500 false chr6: 14330115-14330614 Medicago truncatula
Medtr6g039820 1.0kb upstream 1.0kb upstream 6104 true chr6: 14330615-14336718 Medicago truncatula
Medtr6g039820 1.0kb upstream 1.0kb upstream 1000 false chr6: 14335719-14336718 Medicago truncatula
Medtr6g039820 1.0kb downstream 1.0kb downstream 6104 true chr6: 14329615-14335718 Medicago truncatula
Medtr6g039820 1.0kb downstream 1.0kb downstream 1000 false chr6: 14329615-14330614 Medicago truncatula
Medtr6g039820 2.0kb upstream 2.0kb upstream 7104 true chr6: 14330615-14337718 Medicago truncatula
Medtr6g039820 2.0kb upstream 2.0kb upstream 2000 false chr6: 14335719-14337718 Medicago truncatula
Medtr6g039820 2.0kb downstream 2.0kb downstream 7104 true chr6: 14328615-14335718 Medicago truncatula
Medtr6g039820 2.0kb downstream 2.0kb downstream 2000 false chr6: 14328615-14330614 Medicago truncatula
Medtr6g039820 5.0kb upstream 5.0kb upstream 10104 true chr6: 14330615-14340718 Medicago truncatula
Medtr6g039820 5.0kb upstream 5.0kb upstream 5000 false chr6: 14335719-14340718 Medicago truncatula
Medtr6g039820 5.0kb downstream 5.0kb downstream 10104 true chr6: 14325615-14335718 Medicago truncatula
Medtr6g039820 5.0kb downstream 5.0kb downstream 5000 false chr6: 14325615-14330614 Medicago truncatula
Medtr6g039820 10.0kb upstream 10.0kb upstream 15104 true chr6: 14330615-14345718 Medicago truncatula
Medtr6g039820 10.0kb upstream 10.0kb upstream 10000 false chr6: 14335719-14345718 Medicago truncatula
Medtr6g039820 10.0kb downstream 10.0kb downstream 15104 true chr6: 14320615-14335718 Medicago truncatula
Medtr6g039820 10.0kb downstream 10.0kb downstream 10000 false chr6: 14320615-14330614 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311650 5265 Fabidae View MSA
124069180 5270 Rosid View MSA
123746925 5271 Pentapetalae View MSA
122797485 5272 Eudicot View MSA
122047896 5273 Angiosperm View MSA
121347088 5274 Embryophyte View MSA
123426626 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.045     Low Low
cufflinks 0.351        
cufflinks 0.324        
cufflinks 0.232        
cufflinks 0.827       High
cufflinks 0.072     Low Low
cufflinks 0.644        
cufflinks 0.299        
cufflinks 0.784       High

0 Strain