Gene : Medtr7g087460 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF14632//PF14641 - Acidic N-terminal SPT6 (SPT6_acidic) // Helix-turn-helix DNA-binding domain of SPT6 (HTH_44) Description:  global transcription factor
Genomic Order:  4078 Name:  ? Medtr7g087460
Secondary Identifier:  ? PAC:31077955
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g087460 0.5kb upstream 0.5kb upstream 3692 true chr7: 34038477-34042168 Medicago truncatula
Medtr7g087460 0.5kb upstream 0.5kb upstream 500 false chr7: 34038477-34038976 Medicago truncatula
Medtr7g087460 0.5kb downstream 0.5kb downstream 3692 true chr7: 34038977-34042668 Medicago truncatula
Medtr7g087460 0.5kb downstream 0.5kb downstream 500 false chr7: 34042169-34042668 Medicago truncatula
Medtr7g087460 1.0kb upstream 1.0kb upstream 4192 true chr7: 34037977-34042168 Medicago truncatula
Medtr7g087460 1.0kb upstream 1.0kb upstream 1000 false chr7: 34037977-34038976 Medicago truncatula
Medtr7g087460 1.0kb downstream 1.0kb downstream 4192 true chr7: 34038977-34043168 Medicago truncatula
Medtr7g087460 1.0kb downstream 1.0kb downstream 1000 false chr7: 34042169-34043168 Medicago truncatula
Medtr7g087460 2.0kb upstream 2.0kb upstream 5192 true chr7: 34036977-34042168 Medicago truncatula
Medtr7g087460 2.0kb upstream 2.0kb upstream 2000 false chr7: 34036977-34038976 Medicago truncatula
Medtr7g087460 2.0kb downstream 2.0kb downstream 5192 true chr7: 34038977-34044168 Medicago truncatula
Medtr7g087460 2.0kb downstream 2.0kb downstream 2000 false chr7: 34042169-34044168 Medicago truncatula
Medtr7g087460 5.0kb upstream 5.0kb upstream 8192 true chr7: 34033977-34042168 Medicago truncatula
Medtr7g087460 5.0kb upstream 5.0kb upstream 5000 false chr7: 34033977-34038976 Medicago truncatula
Medtr7g087460 5.0kb downstream 5.0kb downstream 8192 true chr7: 34038977-34047168 Medicago truncatula
Medtr7g087460 5.0kb downstream 5.0kb downstream 5000 false chr7: 34042169-34047168 Medicago truncatula
Medtr7g087460 10.0kb upstream 10.0kb upstream 13192 true chr7: 34028977-34042168 Medicago truncatula
Medtr7g087460 10.0kb upstream 10.0kb upstream 10000 false chr7: 34028977-34038976 Medicago truncatula
Medtr7g087460 10.0kb downstream 10.0kb downstream 13192 true chr7: 34038977-34052168 Medicago truncatula
Medtr7g087460 10.0kb downstream 10.0kb downstream 10000 false chr7: 34042169-34052168 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121657272 5273 Angiosperm View MSA
122315302 5265 Fabidae View MSA
124038809 5270 Rosid View MSA
123610995 5271 Pentapetalae View MSA
122645577 5272 Eudicot View MSA
120929317 5274 Embryophyte View MSA
122969885 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.072        
cufflinks 0.067     Low  
cufflinks 0.083        
cufflinks 0.06     Low  
cufflinks 0.082        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.033     Low Low
cufflinks 0.074        
cufflinks 0.091     Low  

0 Strain