Gene : Medtr7g079180 M. truncatula Mt4.0v1
Defline:  (1 of 72) PF03168 - Late embryogenesis abundant protein (LEA_2) Description:  late embryogenesis abundant protein
Genomic Order:  3494 Name:  ? Medtr7g079180
Secondary Identifier:  ? PAC:31077254
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g079180 0.5kb upstream 0.5kb upstream 4006 true chr7: 30028411-30032416 Medicago truncatula
Medtr7g079180 0.5kb upstream 0.5kb upstream 500 false chr7: 30028411-30028910 Medicago truncatula
Medtr7g079180 0.5kb downstream 0.5kb downstream 4006 true chr7: 30028911-30032916 Medicago truncatula
Medtr7g079180 0.5kb downstream 0.5kb downstream 500 false chr7: 30032417-30032916 Medicago truncatula
Medtr7g079180 1.0kb upstream 1.0kb upstream 4506 true chr7: 30027911-30032416 Medicago truncatula
Medtr7g079180 1.0kb upstream 1.0kb upstream 1000 false chr7: 30027911-30028910 Medicago truncatula
Medtr7g079180 1.0kb downstream 1.0kb downstream 4506 true chr7: 30028911-30033416 Medicago truncatula
Medtr7g079180 1.0kb downstream 1.0kb downstream 1000 false chr7: 30032417-30033416 Medicago truncatula
Medtr7g079180 2.0kb upstream 2.0kb upstream 5506 true chr7: 30026911-30032416 Medicago truncatula
Medtr7g079180 2.0kb upstream 2.0kb upstream 2000 false chr7: 30026911-30028910 Medicago truncatula
Medtr7g079180 2.0kb downstream 2.0kb downstream 5506 true chr7: 30028911-30034416 Medicago truncatula
Medtr7g079180 2.0kb downstream 2.0kb downstream 2000 false chr7: 30032417-30034416 Medicago truncatula
Medtr7g079180 5.0kb upstream 5.0kb upstream 8506 true chr7: 30023911-30032416 Medicago truncatula
Medtr7g079180 5.0kb upstream 5.0kb upstream 5000 false chr7: 30023911-30028910 Medicago truncatula
Medtr7g079180 5.0kb downstream 5.0kb downstream 8506 true chr7: 30028911-30037416 Medicago truncatula
Medtr7g079180 5.0kb downstream 5.0kb downstream 5000 false chr7: 30032417-30037416 Medicago truncatula
Medtr7g079180 10.0kb upstream 10.0kb upstream 13506 true chr7: 30018911-30032416 Medicago truncatula
Medtr7g079180 10.0kb upstream 10.0kb upstream 10000 false chr7: 30018911-30028910 Medicago truncatula
Medtr7g079180 10.0kb downstream 10.0kb downstream 13506 true chr7: 30028911-30042416 Medicago truncatula
Medtr7g079180 10.0kb downstream 10.0kb downstream 10000 false chr7: 30032417-30042416 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311929 5265 Fabidae View MSA
124063327 5270 Rosid View MSA
123749565 5271 Pentapetalae View MSA
122795600 5272 Eudicot View MSA
122043658 5273 Angiosperm View MSA
121348077 5274 Embryophyte View MSA
123380721 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.076        
cufflinks 4.926        
cufflinks 6.514        
cufflinks 10.253     High  
cufflinks 2.44       Low
cufflinks 25.223     High High
cufflinks 23.033     High High
cufflinks 3.29       Low
cufflinks 22.547     High High

0 Strain