Gene : Medtr7g079900 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR34803:SF2 - PHOTOSYSTEM I REACTION CENTER SUBUNIT XI, CHLOROPLASTIC Description:  photosystem I reaction center subunit XI
Genomic Order:  3545 Name:  ? Medtr7g079900
Secondary Identifier:  ? PAC:31079735
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-101 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g079900 0.5kb upstream 0.5kb upstream 1738 true chr7: 30356399-30358136 Medicago truncatula
Medtr7g079900 0.5kb upstream 0.5kb upstream 500 false chr7: 30357637-30358136 Medicago truncatula
Medtr7g079900 0.5kb downstream 0.5kb downstream 1738 true chr7: 30355899-30357636 Medicago truncatula
Medtr7g079900 0.5kb downstream 0.5kb downstream 500 false chr7: 30355899-30356398 Medicago truncatula
Medtr7g079900 1.0kb upstream 1.0kb upstream 2238 true chr7: 30356399-30358636 Medicago truncatula
Medtr7g079900 1.0kb upstream 1.0kb upstream 1000 false chr7: 30357637-30358636 Medicago truncatula
Medtr7g079900 1.0kb downstream 1.0kb downstream 2238 true chr7: 30355399-30357636 Medicago truncatula
Medtr7g079900 1.0kb downstream 1.0kb downstream 1000 false chr7: 30355399-30356398 Medicago truncatula
Medtr7g079900 2.0kb upstream 2.0kb upstream 3238 true chr7: 30356399-30359636 Medicago truncatula
Medtr7g079900 2.0kb upstream 2.0kb upstream 2000 false chr7: 30357637-30359636 Medicago truncatula
Medtr7g079900 2.0kb downstream 2.0kb downstream 3238 true chr7: 30354399-30357636 Medicago truncatula
Medtr7g079900 2.0kb downstream 2.0kb downstream 2000 false chr7: 30354399-30356398 Medicago truncatula
Medtr7g079900 5.0kb upstream 5.0kb upstream 6238 true chr7: 30356399-30362636 Medicago truncatula
Medtr7g079900 5.0kb upstream 5.0kb upstream 5000 false chr7: 30357637-30362636 Medicago truncatula
Medtr7g079900 5.0kb downstream 5.0kb downstream 6238 true chr7: 30351399-30357636 Medicago truncatula
Medtr7g079900 5.0kb downstream 5.0kb downstream 5000 false chr7: 30351399-30356398 Medicago truncatula
Medtr7g079900 10.0kb upstream 10.0kb upstream 11238 true chr7: 30356399-30367636 Medicago truncatula
Medtr7g079900 10.0kb upstream 10.0kb upstream 10000 false chr7: 30357637-30367636 Medicago truncatula
Medtr7g079900 10.0kb downstream 10.0kb downstream 11238 true chr7: 30346399-30357636 Medicago truncatula
Medtr7g079900 10.0kb downstream 10.0kb downstream 10000 false chr7: 30346399-30356398 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040995 5273 Angiosperm View MSA
122306566 5265 Fabidae View MSA
124061167 5270 Rosid View MSA
123750401 5271 Pentapetalae View MSA
122793402 5272 Eudicot View MSA
121343870 5274 Embryophyte View MSA
123424325 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.515     High  
cufflinks 2784.585     High High
cufflinks 2270.95     High  
cufflinks 76.66     High  
cufflinks 2622.937     High High
cufflinks 41.981     High  
cufflinks 14.555     High Low
cufflinks 2596.661     High High
cufflinks 11.215     High Low

0 Strain